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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaggatatgtttgaaatttgatcattgaaacaacctcggttttgttactgaatggctttatacattgtttcagGCATGGAGATTGCCTAGTCAAGGAAGAAATAATCTTGCAAATCGTTACAGTCGTGAAGGTATCTATGTTACTCATCCTTCTAGGGCATTCCGCGATGAGG

Basic information

species Glycine max
transcript GLYMA03G14690.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193360615|gb|FK325931.1|FK325931
EST:     TGGCTAATGTCTTCTGCTTCTCAACCCCATCTCCTCATCATCCCCTAAAG                         GCATGGAAGATTGCCTAGTC
genomic: TGGC-AATGTCTTCTGCTTCTCAACCCCATCTCCTCATCATCCCCTAAAGgcaggatatg ... attgtttcagGCATGGA-GATTGCCTAGTC
EST: gi|7588667|gb|AW704458.1|AW704458
EST:     ATGGCAATGTCTTCTGCTTCTCAACCCCATCTCCTCATCATCCCCTAAAG                         GCATGGAGATTGCCTAGTCAAGGAAGAAATAATCTTGCAAATCGTTACAGT
genomic: ATGGCAATGTCTTCTGCTTCTCAACCCCATCTCCTCATCATCCCCTAAAGgcaggatatg ... attgtttcagGCATGGAGATTGCCTAGTCAAGGAAGAAATAATCTTGCAAATCGTTACAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatcattgaaacaacctcggttttgttactgaatggctttatacattgtttcagGCATGGAGATTGCCTAGTCAAGGAAGAAATAATCTTGCAAATCGTTACAGTCGTGAAGGTATCTATGTTACTCATCCTTCTAGGGCATTCCGCGATGAGG
 atttgat  putative branch site (score: 5)
                                              ttgtttc  putative PPT
                                      tttatacattgttt  TA-rich tract