1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagtttgcctatggaaaattttcttttctattgtgcatgttaatgttcttgctgatactgaagggttttgagtttggaaatatcagGGATGGAGAAGAAAGAAGCCTAGTGGCAGGTTCCAATTGTCTTCATAAAGAAAATAGCATGGAAGGGTGTCTTCTAAAGGGAGCCATTGAGTATTCTTGT
species | Glycine max |
transcript | GLYMA03G07890.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGCATTCGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTT GGATGGAGAAGAEST: gi|58025422|gb|CX712163.1|CX712163
genomic: TTGCATTCGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTTgtaagtttgc ... gaaatatcagGGATGGAGAAGA
EST: TTGCATTCGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTT GGATGGAGAAGAAAGAAGCCTAGTGGCAGGTTCCAATTGTCTTCATAAAGAEST: gi|58015128|gb|CX701870.1|CX701870
genomic: TTGCATTCGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTTgtaagtttgc ... gaaatatcagGGATGGAGAAGAAAGAAGCCTAGTGGCAGGTTCCAATTGTCTTCATAAAGA
EST: TTGCATTCGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTT GGATGGAGAAGAAAGAAGCCTAGTGGCAGGTTCCAATTGTCTTCATAAAGAEST: gi|192326624|gb|FK018496.1|FK018496
genomic: TTGCATTCGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTTgtaagtttgc ... gaaatatcagGGATGGAGAAGAAAGAAGCCTAGTGGCAGGTTCCAATTGTCTTCATAAAGA
EST: TTGCATTCGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTT GGATGGAGAAGAAAGAAGCCTAGTGGCAGGTTCCAATTGTCTTCATAAAGAEST: gi|209705585|gb|BW673566.1|BW673566
genomic: TTGCATTCGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTTgtaagtttgc ... gaaatatcagGGATGGAGAAGAAAGAAGCCTAGTGGCAGGTTCCAATTGTCTTCATAAAGA
EST: TTGCATTCGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTT GGATGGAGAAGAAAGAAGCCTAGTGGCAGGTTCCAATTGTCTTCATAAAGA
genomic: TTGCATTCGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTTgtaagtttgc ... gaaatatcagGGATGGAGAAGAAAGAAGCCTAGTGGCAGGTTCCAATTGTCTTCATAAAGA
tgtgcatgttaatgttcttgctgatactgaagggttttgagtttggaaatatcagGGATGGAGAAGAAAGAAGCCTAGTGGCAGGTTCCAATTGTCTTCATAAAGAAAATAGCATGGAAGGGTGTCTTCTAAAGGGAGCCATTGAGTATTCTTGT
tgctgat putative branch site (score: 3)
atgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttgcctatggaaaattttcttttctattgtgcatgttaatgttcttgctgatactgaagggttttgagtttggaaatatcagGGATGGAGAAGAAAGAAGCCTAGTGGCAGGTTCCAATTGTCTTCATAAAGAAAATAGCATGGAAGGGTGTCTTCTAAAGGGAGCCATTGAGTATTCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG