Sequence
atgc intronic sequence ATGC exonic sequencegttttctctatattgaatatactacctttttaatcttcacagcttttggactggcttctctatgaaacacatcctaaacccatgcttgagcctatccgagtcaaactacacatttcacttaatctaaacaagtgtttattggtagagggcttctttatgtacatgttttatttgttctaattctggcagATACGAGATATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAG
Basic information
species | Glycine max |
transcript | GLYMA03G03120.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os02g51430.2 (Oryza sativa), 3'ss of exon 11
gttttctctatattgaatatactacctttttaatcttcacagcttttggactggcttctctatgaaacacatcctaaacccatgcttgagcctatccgagtcaaactacacatttcacttaatctaaacaagtgtttattggtagagggcttctttatgtacatgttttatttgttctaattctg--gcagATACGAGATATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAG
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------------------------------------------------------------------------------------------cttactccttagaaatggtgatttgcaga-aagatacctagctgtttcttcatatcccactaacttctttcagtctcatgtttttttttgtttctatacagATATGAAATTTTCCAGCTCATGGTAAACCTGTATACTGAAAGGTTCATCCAGATGCTAAGACTTCTCAGTGATAGAGCAAATGATATTCCAAATATAAAT
upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G579509_T01 (Zea mays), 3'ss of exon 2
gttttctctatattgaatatactacctttttaatcttcacagcttttggactggcttctctatgaaacacatcctaaacccatgcttgagcctatccgagtcaaactacacatttcacttaatctaaacaagtgtttat--tggtagagggcttctttatgtacatgttttatttgttctaattctggcagATACGAGATATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAG
|| || | | | | | | || | ||| | | |||| | | | | || ||| |||| |||||| | | ||||||| || || |||||||| |||||||| || ||||||||||| || ||||||||||| || | || || || || || || || | ||| || |
-----------------------------------------------------------------------------------atctgggctatcctagaactagtgatttacataacattttctgatggtttccttatctttgccaacgtgttaaatattcacattccttatttctgc--------gcagATATGAAATTTTCCAGCTCATGGTAAACCTATACACTGAGAGATTCATTCAGATGCTTCGACTTCTCAGTGATAGAGCAAACGATATTCAAAATATAAAC
upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G070045_T01 (Zea mays), 3'ss of exon 7
gttttctctatattgaatatactacctttttaatcttcacagcttttggactggcttctctatgaaacacatcctaaacccatgcttgagcctatccgagtcaaactacacatttcacttaatctaaacaagtgtttattggtagagggcttctttatgtacatgttttatttgttctaattctg-gcagATACGAGATATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAG
| |||||| | ||||| |||| | ||| | | || || | || ||| | ||| ||| || | ||||| ||| || || || |||||||| |||||||| ||||| |||||||| || ||||||||||| || | || || || || || || || | ||| || |
-------------------------------------------------------------------------------------gcagggctatcct--tagaactagtgattt-gcagaatatttcctgatggttttcttatttttgccagcgtattaaattgtcacattccttgt--ttctgcacagGTATGAAATTTTCCAGCTCATGGTAAACCTGTATACTGAGAGATTCATTCAGATGCTTCGACTTCTCAGTGATAGAGCAAACGATATTCAAAATATAAAT
upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 13
lower sequence: AT1G71820.2 (Arabidopsis thaliana), 3'ss of exon 13
gttttctctatattgaatatactacctttttaatcttcacagcttttggactggcttctctatgaaacacatcctaaacccatgcttgagcctatccgagtcaaactacacatttcacttaatctaaacaagtgtttattggtagagggcttctttatgtacatgttttatttgttctaattctggcagATACGAGATATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAG
| | | | | | | | | ||| ||| | | ||| || | | | | | | || ||| ||| | | | || |||| ||||||||||||||||||| ||||| ||||| || ||||| || ||||| || || || ||||| |||||||| || ||||| || || || | ||||| || |||
------------------------------------------------------------------gtttgttcctatctcgttttcctcaagtggacaatgaaagattacagctta--aaatttattctgttccccaagtgaaaaagggttcctta-gca---atcttctttg--------ctggcagATACGAGATATTTCAGCTTATGGTGAACCTGTATACCGAGAGATTCATACAAATGCTCAGATTGCTCAGTGACAGAGCAAACGATCTGACAAATATAGAG
upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 12
gttttctctatattgaatatactacctttttaatcttcacagcttttggactggcttctctatgaaacacatcctaaacccatgcttgagcctatccgagtcaaac-tacacatttcacttaatctaaacaagtgttt-attggtagagggcttctttatgtacatgttttatttgttctaattctggcagATACGAGATATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAG
|| || | | || | | || | | ||| ||| || || | || | | ||| | || || | | | ||| ||||||| || |||||||| || ||||||||||| || ||||||||||| ||||||||||| || |||| || ||| | || ||| || | ||||| || |||
----------------------------------------------------------------------------------------tgctcatttgttttgtacatttgtgtgcatctgtgtgttgtgaagactttcatccgtgaaaatgttttgtttgttctaattcaatctttcttgatt---gcagATATGAAATATTCCAACTCATGGTAAATCTTTATACTGAGAGGTTCATTCAGATGCTTAGGCTGCTCAGTGACCGAGCAAATCAACTGACAAATATAGAG
upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 3'ss of exon 12
gttttctctatattgaatatactacctttttaatcttcacagcttttggactggcttctctatgaaacacatcctaaacccatgcttgagcctatccgagtcaaac-tacacatttcacttaatctaaacaag-tgtttattggtagagggcttctttatgtacatgttttatttgttctaattctggcagATACGAGATATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAG
|| || | ||| | | | || | | ||| | || || | || | | ||| || || || | | | || ||||||| || |||||||| || ||||||||||| || ||||||||||| ||||||||||| || |||| || ||| | || ||| || | ||||| || |||
----------------------------------------------------------------------------------------tgctcatttgtttcatgcatttgtgtgcatctgtgtgttgtgaagattttcatccacgaaaatgttttgtttgttcaaattcaatctttcttgttt---gcagATATGAAATATTCCAACTGATGGTAAATCTTTATACTGAGAGGTTCATTCAGATGCTCAGGCTGCTCAGTGACCGAGCAAATCAACTGACAAATATAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15664484|gb|BI701855.1|BI701855EST: GAAGAGCTTGGAGATGTCTATGACTATGTAGCTCCCTGCTTTCCTCCAAG ATACGAGATATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCA
genomic: GAAGAGCTTGGAGATGTCTATGACTATGTAGCTCCCTGCTTTCCTCCAAGgttttctcta ... attctggcagATACGAGATATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttattggtagagggcttctttatgtacatgttttatttgttctaattctggcagATACGAGATATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAG
ttctaat putative branch site (score: 2)
ttttatttgttctaat TA-rich tract