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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctggttgtcttggagtagcaatgcgatactctctttagtattcttaaacaatactttgatttcttgcatttcgtaactttttcatacaatgtattgcagGTGCGTGGTGGCATACGCTTCCGATCTAATATTTCTTCAAGTAAGTTTGAATCCCCACCGTGAGAAGGGTTTCAGGACACGTTCTGTTAGTCTGGATCAC

Basic information

species Glycine max
transcript GLYMA03G01210.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016196|gb|CX702938.1|CX702938
EST:     TACTGGTTTAGAGCAAAGGGAAAACTTTCAGATGATGAAGCCTTGCATAG                         GTGCGTGGTGGCATACGCTTCCGATCTAATATTTCTTCAATTAAGTTTGAA
genomic: TACTGGTTTAGAGCAAAGGGAAAACTTTCAGATGATGAAGCCTTGCATAGgtacatacat ... tgtattgcagGTGCGTGGTGGCATACGCTTCCGATCTAATATTTCTTCAAGTAAGTTTGAA
EST: gi|213588834|gb|DB984361.1|DB984361
EST:     CTGGTTTAGAGCAAAGGGAAAACTTTCAGATGATGTCAGCAGT-CCTAG                         GTGCGTGGTGGCATACGCTTCCGATCTAATATTTCTTCAAGTAAGTTTGAA
genomic: CTGGTTTAGAGCAAAGGGAAAACTTTCAGATGATG-AAGCCTTGCATAGgtacatacat ... tgtattgcagGTGCGTGGTGGCATACGCTTCCGATCTAATATTTCTTCAAGTAAGTTTGAA
EST: gi|209714421|gb|BW659105.1|BW659105
EST:     TACTGGTTTAGAGCAAAGGGAAAACTTTCAGATGATGAAGCCTTGCATAG                         GTGCGTGGTGGCATACGCTTCCGATCTAATATTTCTTCAAGTAAGTTTGAA
genomic: TACTGGTTTAGAGCAAAGGGAAAACTTTCAGATGATGAAGCCTTGCATAGgtacatacat ... tgtattgcagGTGCGTGGTGGCATACGCTTCCGATCTAATATTTCTTCAAGTAAGTTTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaacaatactttgatttcttgcatttcgtaactttttcatacaatgtattgcagGTGCGTGGTGGCATACGCTTCCGATCTAATATTTCTTCAAGTAAGTTTGAATCCCCACCGTGAGAAGGGTTTCAGGACACGTTCTGTTAGTCTGGATCAC
                          tcgtaac  putative branch site (score: 2)
                             taacttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctggttgtcttggagtagcaatgcgatactctctttagtattcttaaacaatactttgatttcttgcatttcgtaactttttcatacaatgtattgcagGTGCGTGGTGGCATACGCTTCCGATCTAATATTTCTTCAAGTAAGTTTGAATCCCCACCGTGAGAAGGGTTTCAGGACACGTTCTGTTAGTCTGGATCAC

- - - tgtcttg
- - - - - - - - - gcaatgc
- - - - - - - - - - - - - - - - - - - - - - - -aacaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttc