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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgtcactgttttcttcttgataggaaacatgttgaaatatattttggtttcatttgtcttctttgctcttgtccatttcaattgacatctatgttagtgtagtgaacttagatggaaaagtgtcatatattctctttcttttatggcagTGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAG

Basic information

species Glycine max
transcript GLYMA02G41850.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31458680|gb|CD400708.1|CD400708
EST:     ATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAG                         TGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTT
genomic: ATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAGgcatgtcact ... tttatggcagTGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTT
EST: gi|6070488|gb|AW099875.1|AW099875
EST:     ATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAG                         TGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTT
genomic: ATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAGgcatgtcact ... tttatggcagTGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTT
EST: gi|254315842|gb|GR825651.1|GR825651
EST:     ATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAG                         TGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTT
genomic: ATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAGgcatgtcact ... tttatggcagTGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTT
EST: gi|192322275|gb|FK014516.1|FK014516
EST:     ATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAG                         TGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTT
genomic: ATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAGgcatgtcact ... tttatggcagTGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTT
EST: gi|254315128|gb|GR830121.1|GR830121
EST:     ATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAG                         TGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTT
genomic: ATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAGgcatgtcact ... tttatggcagTGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTT
EST: gi|254315841|gb|GR825650.1|GR825650
EST:     ATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAG                         TGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTT
genomic: ATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAGgcatgtcact ... tttatggcagTGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTT
EST: gi|14992061|gb|BI317734.1|BI317734
EST:     ATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAG                         TGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTT
genomic: ATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAGgcatgtcact ... tttatggcagTGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtgtagtgaacttagatggaaaagtgtcatatattctctttcttttatggcagTGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAG
                               tatattctctttcttt  CT-rich tract
                                        tttcttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcatgtcactgttttcttcttgataggaaacatgttgaaatatattttggtttcatttgtcttctttgctcttgtccatttcaattgacatctatgttagtgtagtgaacttagatggaaaagtgtcatatattctctttcttttatggcagTGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT