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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttatgaatcagatttcattaacagatttaaacctatttaaggacatcttatacatgttcttatcattgacgattaacttttagGTTTGGAAGAAAGTGGTATATGTTGATAGACTACTACAGCTCTTTAGATACATACCCCGTGAACAATTGACCATCCCAGATTTCGTCTTTCA

Basic information

species Glycine max
transcript GLYMA02G12670.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G12670.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 3'ss of exon 12
--------------gtgcgttatgaatca--gatttcat--taacagatttaaac-ctatttaaggacatcttatacatgttcttatcattgacgattaacttttagGTTTGGAAGAAAGTGGTATATGTTGATAGACTACTACAGCTCTTTAGATACATACCCCGTGAACAATTGACCATCCCAGATTTCGTCTTTCA
               | |    |||   |  ||||  ||  | ||   | | |   || ||| |   | | || ||  ||     ||  |||   | |    | ||||| |||||||||||||||||||||||  ||||  | ||||| || |||||| | || ||||| || ||||| ||||| || || || |||||
gtaagtccaaaagtatcctccttgaccaaatgattatatcctgacctctgtgacttctgtttgaaagcttattgtaagtg---aaattgttgggaaatggtctctagGTGTGGAAGAAAGTGGTATATGTTGACCGACTCATGCAGCTGTTCAGATACGTTCCACGTGAGCAGTTGACAATCCCCGACTTTGTGTTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19347220|gb|BM892100.1|BM892100
EST:     TTGGACTAAAATTGACAGTATTGGCACTTCAGTTGCTTGTTGACAATATG                         GTTTGGAAGAAAGTGGTATATGTTGATAGACTACTACAGCTCTTTAGATAC
genomic: TTGGACTAAAATTGACAGTATTGGCACTTCAGTTGCTTGTTGACAATATGgtgcgttatg ... taacttttagGTTTGGAAGAAAGTGGTATATGTTGATAGACTACTACAGCTCTTTAGATAC
EST: gi|193697091|gb|FK638905.1|FK638905
EST:     TTGGACTAAAATTGACAGTATTGGCACTTCAGTTGCTTGTTGACAATATG                         GTTTGGAAGAAAGTGGTATAT
genomic: TTGGACTAAAATTGACAGTATTGGCACTTCAGTTGCTTGTTGACAATATGgtgcgttatg ... taacttttagGTTTGGAAGAAAGTGGTATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacctatttaaggacatcttatacatgttcttatcattgacgattaacttttagGTTTGGAAGAAAGTGGTATATGTTGATAGACTACTACAGCTCTTTAGATACATACCCCGTGAACAATTGACCATCCCAGATTTCGTCTTTCA
                                          gattaac  putative branch site (score: 2)
                                                ctttt  CT-rich tract
                                           attaactttta  TA-rich tract