1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...actacatgctcttcaattctcagttggacccagtattggttatgtttgttgaagcataactttcttatctagattattgttactgatatttttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAAGGTTCTTGGAGCCTCGATGTGTGGACCTGATGCGCCTGAAATTATACAG
species | Glycine max |
transcript | GLYMA02G08180.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGGTTTTCACATCAATCTTCAATCCTATGAAAAATACCATCTCTGG GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAAEST: gi|7233249|gb|AW568597.1|AW568597
genomic: CTGTTGGTTTTCACATCAATCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... tttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
EST: CTGTTGGTTTTCACATCAATCTTCAATCCTATGAAAAATACCATCTCTGG GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAAEST: gi|192328962|gb|FK019689.1|FK019689
genomic: CTGTTGGTTTTCACATCAATCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... tttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
EST: CTGTTGGTTTTCACATCAATCTTCAATCCTATGAAAAATACCATCTCTGG GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
genomic: CTGTTGGTTTTCACATCAATCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... tttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
ttgttgaagcataactttcttatctagattattgttactgatatttttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAAGGTTCTTGGAGCCTCGATGTGTGGACCTGATGCGCCTGAAATTATACAG
tactgat putative branch site (score: 2)
tatttttc CT-rich tract
attattgttactgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actacatgctcttcaattctcagttggacccagtattggttatgtttgttgaagcataactttcttatctagattattgttactgatatttttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAAGGTTCTTGGAGCCTCGATGTGTGGACCTGATGCGCCTGAAATTATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - catgctc
- - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttactg