Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattattactagttgcattaacattcgtcgcaaatggtgccacttgttatgatgataaattgacaattcaagcttgcttctttctatctctttgcagACTACTTGTGCATTGTCTCTTGGTTTTGGGGAGGATACCATCAATGCATCATCAGTTCTTGTGATGCCAATGATGTCATCGAGAATGACTGGATTCAGAG

Basic information

species Glycine max
transcript GLYMA02G07510.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07510.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 3'ss of exon 13
gtattattactagttgcattaacattcgtcgcaaatggtgccacttgttatgatgataaattgacaattcaagcttgcttctttctatctctttgcagACTACTTGTGCATTGTCTCTTGGTTTTGGGGAGGATACCATCAATGCATCATCAGTTCTTGTGATGCCAATGATGTCATCGAGAATGACTGGATTCAGAG
               | | |   |     |  |  ||   || ||   |  ||||  | |||   |||   | ||    | ||| |        |||| || ||||| |||| || ||||||||||| |||||| | |||||||||||| | | |||||||||||| ||| ||||||| |  || ||||| |||||||
---------------gtactgctaacttgcttagttgactcctctctatg-gatgcaatatttttaat---aactaatctttttgt--------gcagGCTGCTTGTTCATTATCACTTGGTTTTGGAGAGGATTCAATCAATGCATCAGCTGGTCTTGTGATGCCCATGGTGTCATCAAAGATAACTGGGTTCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151399979|gb|EV269850.1|EV269850
EST:     TAGTTAAAGCAATACTAATAAAGATTACAGATTTGTTGGTAAAGGCAAAG                         ACTACTTGTGCATTGTCTCTTGGTTTTGGGGAGGATACCATCAATGCATCA
genomic: TAGTTAAAGCAATACTAATAAAGATTACAGATTTGTTGGTAAAGGCAAAGgtattattac ... ctctttgcagACTACTTGTGCATTGTCTCTTGGTTTTGGGGAGGATACCATCAATGCATCA
EST: gi|207830090|gb|GD801446.1|GD801446
EST:     TAGTTAAAGCAATACTAATAAAGATTACAGATTTGTTGGTAAAGGCAAAG                         ACTACTTGTGCATTGTCTCTTGGTTTTTGGGGAGGATACCATCAATGCATC
genomic: TAGTTAAAGCAATACTAATAAAGATTACAGATTTGTTGGTAAAGGCAAAGgtattattac ... ctctttgcagACTACTTGTGCATTGTCTCTTGG-TTTTGGGGAGGATACCATCAATGCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttatgatgataaattgacaattcaagcttgcttctttctatctctttgcagACTACTTGTGCATTGTCTCTTGGTTTTGGGGAGGATACCATCAATGCATCATCAGTTCTTGTGATGCCAATGATGTCATCGAGAATGACTGGATTCAGAG
               aattgac  putative branch site (score: 3)
                              cttgcttctttctatc  putative PPT
     tatgatgataaatt  TA-rich tract