1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...cttccttatatcatcctttttccccctattaggaacatatgcttatcctcataacaaaactctatttgctgttccttatctaattttttcattttgtcagATTCTTGGGCCTGATAGTGGGTGGCAGCCAATCCCACTCACGGACGTCATTACTTCTGCTGCTGTAAAGAAGGCTTATAGGAAGGCCACCCTTTGTGTCC
species | Glycine max |
transcript | GLYMA02G06160.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CAAGTGGAAAAGAAGGAAACCTGCGTGCATTACTTTCAACCTTGCAATAT ATTCTTGGGCCTGATAGTGGGTGGCAGCCAATCCCACTCACGGACGTCATTEST: gi|21888118|gb|BQ741331.1|BQ741331
genomic: CAAGTGGAAAAGAAGGAAACCTGCGTGCATTACTTTCAACCTTGCAATATgtaggttttt ... attttgtcagATTCTTGGGCCTGATAGTGGGTGGCAGCCAATCCCACTCACGGACGTCATT
EST: CAAGTGGAAAAGAAGGAAACCTGCGTGCATTACTTTCAACCTTGCAATAT ATTCTTGGGCCTGATAGTGGGTGGCAGCCAATCCCACTCACGGACGTCATT
genomic: CAAGTGGAAAAGAAGGAAACCTGCGTGCATTACTTTCAACCTTGCAATATgtaggttttt ... attttgtcagATTCTTGGGCCTGATAGTGGGTGGCAGCCAATCCCACTCACGGACGTCATT
tcctcataacaaaactctatttgctgttccttatctaattttttcattttgtcagATTCTTGGGCCTGATAGTGGGTGGCAGCCAATCCCACTCACGGACGTCATTACTTCTGCTGCTGTAAAGAAGGCTTATAGGAAGGCCACCCTTTGTGTCC
ttttttcattttgtc CT-rich tract
ttatctaattttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttccttatatcatcctttttccccctattaggaacatatgcttatcctcataacaaaactctatttgctgttccttatctaattttttcattttgtcagATTCTTGGGCCTGATAGTGGGTGGCAGCCAATCCCACTCACGGACGTCATTACTTCTGCTGCTGTAAAGAAGGCTTATAGGAAGGCCACCCTTTGTGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
cttcctt
- - - - - - - - - -ttccccc
- - - - - - - - - - - - - - - - - -catatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgctg