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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcttagtaaaaatgtaaaacgatttaatttaaaagatttgttttaaatagacaaaaagtaaaaattattacttaacatatttgttcatttttaagcagTTTACTCACGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT

Basic information

species Glycine max
transcript GLYMA02G05680.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214004656|gb|DB988984.1|DB988984
EST:     ATGCTTACTCGAGGACTGACTGGATGCCAT-CAGTTGCCTTCCGTGCCAG                         TTTACTCACGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGAT
genomic: ATGCTTACTCGAGGACTGACTGGATG-CTTGGAGTTGCCTTCCGTGCCAGgtatatgaaa ... ttttaagcagTTTACTCACGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGAT
EST: gi|24205572|gb|BU964825.1|BU964825
EST:     AATGCTTACTCGAGGACTGACTGGATGCTTGGAGTTGCCTTCCGTGCCAG                         TTTACTCACGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGAT
genomic: AATGCTTACTCGAGGACTGACTGGATGCTTGGAGTTGCCTTCCGTGCCAGgtatatgaaa ... ttttaagcagTTTACTCACGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGAT
EST: gi|31462052|gb|CD404080.1|CD404080
EST:     AATGCTTACTCGAGGACTGACTGGATGCTTGGAGTTGCCTTCCGTGCCAG                         TTTACTCACGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGAT
genomic: AATGCTTACTCGAGGACTGACTGGATGCTTGGAGTTGCCTTCCGTGCCAGgtatatgaaa ... ttttaagcagTTTACTCACGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGAT
EST: gi|151404374|gb|EV274184.1|EV274184
EST:     AATGCTTACTCGAGGACTGACTGGATGCTTGGAGTTGCCTTCCGTGCCAG                         TTTACTCACGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGAT
genomic: AATGCTTACTCGAGGACTGACTGGATGCTTGGAGTTGCCTTCCGTGCCAGgtatatgaaa ... ttttaagcagTTTACTCACGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatagacaaaaagtaaaaattattacttaacatatttgttcatttttaagcagTTTACTCACGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT
                          acttaac  putative branch site (score: 3)
                                        ttcattttt  putative PPT
         aaaaagtaaaaattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttcttagtaaaaatgtaaaacgatttaatttaaaagatttgttttaaatagacaaaaagtaaaaattattacttaacatatttgttcatttttaagcagTTTACTCACGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - agtaaaaa
- - - - - - - -gtaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - acaaaaa