1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...acttcaagaactacaacatatatgatgtagaaagcacatattccactggttttcttttactactttctaatgattgtgtatgtcaaacttatgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGATATTATGGATAGTTTCAAAAAGTTCAATGATGAATTCATGGAGCAATAC
species | Glycine max |
transcript | GLYMA02G04320.3 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|120490930|gb|EH219097.1|EH219097
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|120495674|gb|EH223841.1|EH223841
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|120529136|gb|EH257270.1|EH257270
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|120493898|gb|EH222065.1|EH222065
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|31471775|gb|CD413803.1|CD413803
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|31461736|gb|CD403764.1|CD403764
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCAAATCCCCTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTAEST: gi|213594117|gb|DB981417.1|DB981417
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAA-GAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|193664230|gb|FK610000.1|FK610000
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|14990047|gb|BI315720.1|BI315720
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|31475863|gb|CD417891.1|CD417891
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|31465137|gb|CD407165.1|CD407165
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|22522821|gb|BU081632.1|BU081632
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|6667735|gb|AW279186.1|AW279186
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCACGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|31464663|gb|CD406676.1|CD406676
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|120495271|gb|EH223438.1|EH223438
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|209697331|gb|BW655572.1|BW655572
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|213612154|gb|DB976815.1|DB976815
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTCCCAGCTGAGGAAGACATGCCTGAEST: gi|209706986|gb|BW683249.1|BW683249
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|31467900|gb|CD409928.1|CD409928
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|31475761|gb|CD417789.1|CD417789
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|7639756|gb|AW734072.1|AW734072
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|120494927|gb|EH223094.1|EH223094
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|209723921|gb|BW675241.1|BW675241
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|23735380|gb|BU765969.1|BU765969
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|31461996|gb|CD404024.1|CD404024
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|120493211|gb|EH221378.1|EH221378
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|13481701|gb|BG511044.1|BG511044
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|213600111|gb|DB979774.1|DB979774
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCTACTGTTCCTGGTTCAGGATTTGGTCAGAA-GAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGAEST: gi|16349405|gb|BI975000.1|BI975000
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
ctggttttcttttactactttctaatgattgtgtatgtcaaacttatgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGATATTATGGATAGTTTCAAAAAGTTCAATGATGAATTCATGGAGCAATAC
ttctaat putative branch site (score: 2)
tttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttcaagaactacaacatatatgatgtagaaagcacatattccactggttttcttttactactttctaatgattgtgtatgtcaaacttatgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGATATTATGGATAGTTTCAAAAAGTTCAATGATGAATTCATGGAGCAATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA