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gtactttagatggaaaagattattttgttatcactttctaccaagaaaaaaaaatgaaatcatctatcaaggaaatttctgaactgcttagtagttgtatatagttaggtgctaacggtttcatgcattaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGACTAGTGGAGAACCTGAAAGACCCTGTCCACATATAAGACTCCTACACAG
species | Glycine max |
transcript | GLYMA01G42940.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCAACCAGCACTACTATACATCGTTCCATTTACCCTTG GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGAEST: gi|18039168|gb|BM307462.1|BM307462
genomic: CCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGAEST: gi|254332376|gb|GR846421.1|GR846421
genomic: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGAEST: gi|192332460|gb|FK024221.1|FK024221
genomic: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGAEST: gi|151395947|gb|EV265824.1|EV265824
genomic: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGAEST: gi|151400533|gb|EV270347.1|EV270347
genomic: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGAEST: gi|192332461|gb|FK024222.1|FK024222
genomic: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGAEST: gi|193422007|gb|FK386680.1|FK386680
genomic: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: CATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGAEST: gi|7284908|gb|AW597395.1|AW597395
genomic: CATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
aactgcttagtagttgtatatagttaggtgctaacggtttcatgcattaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGACTAGTGGAGAACCTGAAAGACCCTGTCCACATATAAGACTCCTACACAG
tatatagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttagatggaaaagattattttgttatcactttctaccaagaaaaaaaaatgaaatcatctatcaaggaaatttctgaactgcttagtagttgtatatagttaggtgctaacggtttcatgcattaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGACTAGTGGAGAACCTGAAAGACCCTGTCCACATATAAGACTCCTACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA