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gtgagctcctgtcacatttacttgctagcttgatttgatattagatatgacctaacagccagaggcctgcaactaatgttttttagtttattatttcagGGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCAATGAAATTTATGGTGCCAGACAAGTTCTCATACCATGCAAAAGAAACAA
species | Glycine max |
transcript | GLYMA01G39430.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCAGCTGACTAATATAAGTGGCAATCTGTGGGGGAAAACTCTTCAG GGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCAEST: gi|208202098|gb|GD997077.1|GD997077
genomic: TCAGCTGACTAATATAAGTGGCAATCTGTGGGGGAAAACTCTTCAGgtgagctcct ... attatttcagGGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCA
EST: GGGGGAAAACTCTTCAG GGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCATGCAEST: gi|207739970|gb|GD716554.1|GD716554
genomic: GGGGGAAAACTCTTCAGgtgagctcct ... attatttcagGGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCA
EST: GGGGGAAAACTCTTCAG GGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCATGCAEST: gi|193416446|gb|FK384952.1|FK384952
genomic: GGGGGAAAACTCTTCAGgtgagctcct ... attatttcagGGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCA
EST: GGGGGAAAACTCTTCAG GGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCAEST: gi|207823370|gb|GD795389.1|GD795389
genomic: GGGGGAAAACTCTTCAGgtgagctcct ... attatttcagGGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCA
EST: GGGGGAAAACTCTCCAG GGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCAEST: gi|193593256|gb|FK545788.1|FK545788
genomic: GGGGGAAAACTCTTCAGgtgagctcct ... attatttcagGGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCA
EST: GGGGGAAAACTCTTCAG GGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCAEST: gi|208225422|gb|GE025421.1|GE025421
genomic: GGGGGAAAACTCTTCAGgtgagctcct ... attatttcagGGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCA
EST: TCAGCTGACTAATATAAGTGGCAATCTGTGGGGGAAAACTACTTCAG GGTGCTCGAGCACAGAGEST: gi|207712764|gb|GD693388.1|GD693388
genomic: TCAGCTGACTAATATAAGTGGCAATCTGTGGGGGAAAACT-CTTCAGgtgagctcct ... attatttcagGGTGCTCGAGCACAGAG
EST: GGGGGAAAACTCTTCAG GGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCA
genomic: GGGGGAAAACTCTTCAGgtgagctcct ... attatttcagGGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCA
atatgacctaacagccagaggcctgcaactaatgttttttagtttattatttcagGGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCAATGAAATTTATGGTGCCAGACAAGTTCTCATACCATGCAAAAGAAACAA
aactaat putative branch site (score: 2)
ttatttc putative PPT
aactaatgttttttag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctcctgtcacatttacttgctagcttgatttgatattagatatgacctaacagccagaggcctgcaactaatgttttttagtttattatttcagGGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCAATGAAATTTATGGTGCCAGACAAGTTCTCATACCATGCAAAAGAAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA