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...atgaatagaataagtttaataattaagaaaaaaaaatagagggatttcctgtagactttagtagacagtagaaattaatcaaactattaattttgtgcagTCTACTTTCACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT
species | Glycine max |
transcript | GLYMA01G37420.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AATGCTTATTCAAGAAATGACTGGATGCTTGGAGTTGCTTTCCGCGCCAG TCTACTTTCACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATEST: gi|15202089|gb|BI425216.1|BI425216
genomic: AATGCTTATTCAAGAAATGACTGGATGCTTGGAGTTGCTTTCCGCGCCAGgtacacaaaa ... ttttgtgcagTCTACTTTCACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGAT
EST: AATGCTTATTCAAGAAATGACTGGATGCTTGGAGTTGCTTTCCGCGCCAG TCTACTTTCACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATEST: gi|12773115|gb|BG238042.1|BG238042
genomic: AATGCTTATTCAAGAAATGACTGGATGCTTGGAGTTGCTTTCCGCGCCAGgtacacaaaa ... ttttgtgcagTCTACTTTCACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGAT
EST: AATGCTTATTCAAGAAATGACTGGATGCTTGGAGTTGCTTTCCGCGCCAG TCTACTTTCACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGNGAT
genomic: AATGCTTATTCAAGAAATGACTGGATGCTTGGAGTTGCTTTCCGCGCCAGgtacacaaaa ... ttttgtgcagTCTACTTTCACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGAT
ttcctgtagactttagtagacagtagaaattaatcaaactattaattttgtgcagTCTACTTTCACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT
tattaat putative branch site (score: 2)
agtagaaattaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaatagaataagtttaataattaagaaaaaaaaatagagggatttcctgtagactttagtagacagtagaaattaatcaaactattaattttgtgcagTCTACTTTCACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- gaatagaa
- - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaact