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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacaacacatttcaactattaaatacctttgcagatctttgtaaaataatagaatttacaagttacaatgtctttcacttgaaaacagCATGAGATATCTTAGAAAAGAGAGGCAAATGCTGAGCAAGCAAATGCATAAGCGACTGTCTAAATATGATAGACAGAACCTGTACTTGAAATGGGGCCTT

Basic information

species Glycine max
transcript GLYMA01G37340.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193684968|gb|FK626492.1|FK626492
EST:     CAAGGCAATCAAACTGTGGAAGATGGACGAACCCTCACACCTGAGTTAAG                         CATGAGATATCTTAGAAAAGAGAGGCAAATGCTGAGCAAGCAAATGCATAA
genomic: CAAGGCAATCAAACTGTGGAAGATGGACGAACCCTCACACCTGAGTTAAGgtaaacaaca ... ttgaaaacagCATGAGATATCTTAGAAAAGAGAGGCAAATGCTGAGCAAGCAAATGCATAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatctttgtaaaataatagaatttacaagttacaatgtctttcacttgaaaacagCATGAGATATCTTAGAAAAGAGAGGCAAATGCTGAGCAAGCAAATGCATAAGCGACTGTCTAAATATGATAGACAGAACCTGTACTTGAAATGGGGCCTT
                                     tctttcactt  CT-rich tract
        taaaataatagaattt  TA-rich tract