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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtttgtgaatgcatgtaatccatgtgtggcgattttgtttagagctcatgcagtctacaaaagagaattttaaggaagttgttgtttgaaatgatttctgggcaccattctacatatactcattgccctaatggatgttgaatgttatgtctagTTCACCAAGTTGCTCAAGCTTGACTTGCCTCGGAGACAAAAAGTAGATTGCAAATGAGCTCCATCAACTGATACG

Basic information

species Glycine max
transcript GLYMA01G25690.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19345796|gb|BM890676.1|BM890676
EST:     GCAGCAGTCCTTACCTGGAGTGGGATGAGCTAGAGCTCAAGACATCTCAG                         TTCACCAAGTTGCTCAAGCTTGACTTGCCTCGGAGACAAAAAGTAGATTGC
genomic: GCAGCAGTCCTTACCTGGAGTGGGATGAGCTAGAGCTCAAGACATCTCAGgtgtgtttgt ... ttatgtctagTTCACCAAGTTGCTCAAGCTTGACTTGCCTCGGAGACAAAAAGTAGATTGC
EST: gi|31456606|gb|CD398634.1|CD398634
EST:     GCACCAGTCCTTACCTGGAGTGGGATGAGCTAGAGCTCAAGACATCTCAG                         TTCACCAAGTTGCTCAAGCTTGACTTGCCTCGGAGACAAAAAGTAGATTGC
genomic: GCAGCAGTCCTTACCTGGAGTGGGATGAGCTAGAGCTCAAGACATCTCAGgtgtgtttgt ... ttatgtctagTTCACCAAGTTGCTCAAGCTTGACTTGCCTCGGAGACAAAAAGTAGATTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggcaccattctacatatactcattgccctaatggatgttgaatgttatgtctagTTCACCAAGTTGCTCAAGCTTGACTTGCCTCGGAGACAAAAAGTAGATTGCAAATGAGCTCCATCAACTGATACG
                          ccctaat  putative branch site (score: 3)
 tacatata  TA-rich tract