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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataccttcaagaactacaacatatatgatgtagaaagaaatattgcactggttttcttttactacttgctaatgattctgtgtcaaacttttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGCTATTATGGATAGTTTCAAAAAGTTCAATGATGAATTCATGGAGCAATAC

Basic information

species Glycine max
transcript GLYMA01G03260.3
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03260.2 (Glycine max), 3'ss of exon 13
lower sequence: AT1G70580.2 (Arabidopsis thaliana), 3'ss of exon 12
ataccttcaagaactacaacatatatgatgtagaaagaaatattgcactggttttcttttactacttgctaatgattctgtgtcaaacttttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGCTATTATGGATAGTTTCAAAAAGTTCAATGATGAATTCATGGAGCAATAC
         ||||  | | | | | || | || |     || ||            | || |  |  ||| ||  || | ||||     ||||  | |||||| || ||||| ||||| || ||| | ||||  || ||||| ||||| |  |||||||| ||||||||||||||||||||||| || |||   || |||
-------gtagaaaaaaaccctctgtgttttacagtttcatgttat----------tcttgcagcaagctcatttttgtttgtc---tgtttgttt-cagGGTGTTTCATTTAAGGACAACAATTCTGCCAGCAGAAGAAGAAATGCCAGAGATTATGGACAGTTTCAAAAAGTTCAATGATGAGTTTATGTCTCAGTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31474771|gb|CD416799.1|CD416799
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31305819|gb|CD391022.1|CD391022
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|213590815|gb|DB975628.1|DB975628
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31470466|gb|CD412494.1|CD412494
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGATAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|213607743|gb|DB983782.1|DB983782
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31308314|gb|CD393517.1|CD393517
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31311781|gb|CD396984.1|CD396984
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|120491744|gb|EH219911.1|EH219911
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|209697563|gb|BW660570.1|BW660570
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31306821|gb|CD392024.1|CD392024
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|22525125|gb|BU083936.1|BU083936
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31311104|gb|CD396307.1|CD396307
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|14205591|gb|BG839269.1|BG839269
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|19347413|gb|BM892293.1|BM892293
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|207727020|gb|GD702944.1|GD702944
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|14205453|gb|BG839131.1|BG839131
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGYGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|209708281|gb|BW683871.1|BW683871
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|19348485|gb|BM893026.1|BM893026
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|17400767|gb|BM177549.1|BM177549
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|51343112|gb|CO983845.1|CO983845
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|10238022|gb|BE806910.1|BE806910
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31471989|gb|CD414017.1|CD414017
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31309987|gb|CD395190.1|CD395190
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATNTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|209725789|gb|BW659917.1|BW659917
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|15337462|gb|BI498118.1|BI498118
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31311866|gb|CD397069.1|CD397069
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|51337166|gb|CO981032.1|CO981032
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|14206264|gb|BG839942.1|BG839942
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31305424|gb|CD390627.1|CD390627
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACCCGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|22525274|gb|BU084085.1|BU084085
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31464694|gb|CD406707.1|CD406707
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31464508|gb|CD406536.1|CD406536
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|208255082|gb|GE053098.1|GE053098
EST:     AGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: AGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|7234825|gb|AW570158.1|AW570158
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|15201468|gb|BI424886.1|BI424886
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGT
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|207694218|gb|GD675643.1|GD675643
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31466972|gb|CD409000.1|CD409000
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31465574|gb|CD407602.1|CD407602
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31471002|gb|CD413030.1|CD413030
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31470253|gb|CD412221.1|CD412221
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|14999724|gb|BI320538.1|BI320538
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|22932146|gb|BU549285.1|BU549285
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|14205407|gb|BG839085.1|BG839085
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTKCCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|120529211|gb|EH257345.1|EH257345
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|26268872|gb|CA819935.1|CA819935
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31465928|gb|CD407956.1|CD407956
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|16342773|gb|BI968368.1|BI968368
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|209705866|gb|BW675971.1|BW675971
EST:     GCCACTGGCATATCCACTGTTCCTGGTCCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|120492417|gb|EH220584.1|EH220584
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|16104899|gb|BI892639.1|BI892639
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31460752|gb|CD402780.1|CD402780
EST:     CTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: CTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|6916113|gb|AW397643.1|AW397643
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31308160|gb|CD393363.1|CD393363
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|192310555|gb|FG999228.1|FG999228
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTTTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|27426013|gb|CA937533.1|CA937533
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|20814649|gb|BQ299127.1|BQ299127
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|26043790|gb|CA782174.1|CA782174
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGATAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|8669453|gb|BE190560.1|BE190560
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|27424258|gb|CA935778.1|CA935778
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31469797|gb|CD411825.1|CD411825
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|213597488|gb|DB977795.1|DB977795
EST:     TCCACTGTTCCTGGTCCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: TCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|5607184|gb|AI901282.1|AI901282
EST:     CAGGATTTGGACAGAGAGTAGG                         GGTCTTCCATTTGAGGACTACTATGGTTACCAGACGAGGAAGACATGCCCG
genomic: CAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTAT-TTTACCAGACGAGGAAGACATGCCCG
EST: gi|13482291|gb|BG511634.1|BG511634
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|23728451|gb|BU762278.1|BU762278
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|120532614|gb|EH260747.1|EH260747
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|31470673|gb|CD412701.1|CD412701
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|17020873|gb|BM091907.1|BM091907
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
EST: gi|120491540|gb|EH219707.1|EH219707
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGG                         GGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGACAGAGAGAAGGgtacatactt ... ttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactggttttcttttactacttgctaatgattctgtgtcaaacttttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGCTATTATGGATAGTTTCAAAAAGTTCAATGATGAATTCATGGAGCAATAC
                     tgctaat  putative branch site (score: 2)
                                          cttttgc  putative PPT
      ttttctttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ataccttcaagaactacaacatatatgatgtagaaagaaatattgcactggttttcttttactacttgctaatgattctgtgtcaaacttttgcgtacagGGTCTTCCATTTGAGGACTACTATTTTACCAGACGAGGAAGACATGCCCGCTATTATGGATAGTTTCAAAAAGTTCAATGATGAATTCATGGAGCAATAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- accttca
- - - - - - - - - - - - -tgatgta
- - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - -tgcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaact