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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttattttttattataaagaataagattagctgttttttcttgtcatattctatataaactaaattgtggcggtgcttacctactgtagGCATGCTTTTCTCCCCTATCTGATGCAAGCTCCTTTGTGGTACTTTATATTGTTACGTCGGTATACTTTTCTGGAGTCATG

Basic information

species Glycine max
transcript GLYMA01G01270.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01270.1 (Glycine max), 3'ss of exon 13
lower sequence: AT5G19690.1 (Arabidopsis thaliana), 3'ss of exon 13
gtgagttatttttt-attata---aagaataagattagctgttt-------tttcttgtc---atattctatataaactaaattgtggcggtgcttacctactgt----agGCATGCTTTTCTCCCCTATCTGATGCAAGCTCCTTTGTGGTACTTTATATTGTTACGTCGGTATACTTTTCTGGAGTCATG
||||||||  |||| ||| ||   |  ||| |||||   || |        ||| |||||   ||||| | | |  | |   ||    |  | |||| || ||||    |||| |||||||| || ||||||||||| ||||| |||||||| ||||| ||||| | ||| ||||||||||||||||| |||
gtgagttaaattttgattgtagttactaattagattttgtgctgaataacattttttgtccatatattttgtgttgatt--ctttcctcttttcttatcttctgttggtagGCGTGCTTTTCGCCTCTATCTGATGCCAGCTCTTTTGTGGTCCTTTACATTGTAATGTCTGTATACTTTTCTGGAGTTATG

upper sequence: GLYMA01G01270.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 13
------gtgagttattttttattataaagaataagattagctgttttttcttgtcatattc-tatataaactaa-attgtggcggtgcttacctactgtagGCATGCTTTTCTCCCCTATCTGATGCAAGCTCCTTTGTGGTACTTTATATTGTTACGTCGGTATACTTTTCTGGAGTCATG
       |||  ||| ||||    | || | |    |||| |   |  | || || ||  | |||  |  ||   ||      |||  |||  |   | ||||||||||||  || ||||||||||||||||||||||| || ||||| || || || || ||||| |||||||||||||||
gtgagtttgatctatctttttacctcaatattgcttttagtttcctacttttttcttaaccatatccatccttgtatgacattggtctttatttg--gcagGCATGCTTTTTGCCACTATCTGATGCAAGCTCCTTTGTTGTTCTTTACATAGTGACATCTGTATATTTTTCTGGAGTCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcttgtcatattctatataaactaaattgtggcggtgcttacctactgtagGCATGCTTTTCTCCCCTATCTGATGCAAGCTCCTTTGTGGTACTTTATATTGTTACGTCGGTATACTTTTCTGGAGTCATG
                                       tgcttac  putative branch site (score: 2)
                                         cttacct  CT-rich tract
         tcatattctatataaa  TA-rich tract