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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctatggttcaatagttgctcctgagaattcgggaagctgttttctggattaaatttaagatataagcacatgatgctgataatgttttctctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC

Basic information

species Glycine max
transcript GLYMA01G00430.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G00430.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv11s0065g00640.t01 (Vitis vinifera), 3'ss of exon 13
ctatggttcaatagttgctcctgagaattcgggaagctgttttctggattaaatttaagatataagcacatg-atgctgataatgttttctctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
 | | || ||||  |   |    || | |      | |   |  |   ||||  |  || | |      | | ||  |   | |   || ||| || |||| ||||||||||||||||||||||||| ||||| ||||||||||||||
tttttgtacaattatatattaaaagcaatgttatggatacatgttcttttaatctacagttttggttgaaagcataattccatttccttttctatt-tcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18733901|gb|BM527876.1|BM527876
EST:     ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
genomic: ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
EST: gi|22524821|gb|BU083632.1|BU083632
EST:     ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
genomic: ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
EST: gi|42723073|gb|CK768972.1|CK768972
EST:     ATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
genomic: ATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
EST: gi|18732433|gb|BM527041.1|BM527041
EST:     ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
genomic: ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
EST: gi|19269470|gb|BM885726.1|BM885726
EST:     ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
genomic: ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
EST: gi|13789963|gb|BG652554.1|BG652554
EST:     ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
genomic: ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
EST: gi|213590932|gb|DB973729.1|DB973729
EST:     ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTG
genomic: ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTG
EST: gi|24136389|gb|BU926899.1|BU926899
EST:     ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
genomic: ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggattaaatttaagatataagcacatgatgctgataatgttttctctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
                            tgctgat  putative branch site (score: 3)
                                       ttttctctgttgtc  putative PPT
     aaatttaagatataa  TA-rich tract