1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatggttaaatatctgccagtgagttccctttttcaggtttcttgcgctactaccatgttttactgataggtttctcattgtttctcaattctagGTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTTGCATATAATCAG
species | Glycine max |
transcript | GLYMA20G37370.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTTGGCTAAAAAATCACCAAATGAGAAAATCAGCTTCAGACAGCAA GTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTTEST: gi|14991594|gb|BI317267.1|BI317267
genomic: CTTGGCTAAAAAATCACCAAATGAGAAAATCAGCTTCAGACAGCAAgtatggttaa ... tcaattctagGTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTT
EST: CCAACTTGGCTAAAAAATCACCAAATGAGAAAATCAGCTTCAGACAGCAA GTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTTEST: gi|5677123|gb|AI938253.1|AI938253
genomic: CCAACTTGGCTAAAAAATCACCAAATGAGAAAATCAGCTTCAGACAGCAAgtatggttaa ... tcaattctagGTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTT
EST: CCAACTTGGCTAAAAAATCACCAAATGAGAAAATCAGCTTCAGACAGCAA GTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTTEST: gi|22523871|gb|BU082682.1|BU082682
genomic: CCAACTTGGCTAAAAAATCACCAAATGAGAAAATCAGCTTCAGACAGCAAgtatggttaa ... tcaattctagGTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTT
EST: CCAACTTGGCTAAAAAATCACCAAATGAGAAAATCAGCTTCAGACAGCAA GTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTTEST: gi|24136423|gb|BU926933.1|BU926933
genomic: CCAACTTGGCTAAAAAATCACCAAATGAGAAAATCAGCTTCAGACAGCAAgtatggttaa ... tcaattctagGTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTT
EST: CCAACTTGGCTAAAAAATCACCAAATGAGAAAATCAGCTTCAGACAGCAA GTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTT
genomic: CCAACTTGGCTAAAAAATCACCAAATGAGAAAATCAGCTTCAGACAGCAAgtatggttaa ... tcaattctagGTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTT
tcttgcgctactaccatgttttactgataggtttctcattgtttctcaattctagGTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTTGCATATAATCAG
tactgat putative branch site (score: 2)
tttctcattgtttctc putative PPT
atgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggttaaatatctgccagtgagttccctttttcaggtttcttgcgctactaccatgttttactgataggtttctcattgtttctcaattctagGTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTTGCATATAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT