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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagaatacatatacatatacatcaattaagtggttttactgaacccattgacatcaactaatcatgtagccaacctcaccttgtgggataaggcttagtggttgttgttgtttttgtatcatgaaaactaaattttcccaattatatcagcatgctgccttgtcattcttttctatttatttgtttcagGTGTTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGCTTCTGGTCACTG

Basic information

species Glycine max
transcript GLYMA20G25100.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 3'ss of exon 5
gtaagagaatacatatacatatacatcaattaagtggttttactgaacccattgacatcaactaatcatgtagccaacctcaccttgtgggataaggcttagtggttgttgttgtttttgtatcatgaaaactaaattttcccaattatatcagcatgctgccttgtcattcttttctatttatttgtttcagGTGTTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGCTTCTGGTCACTG
                                                                                    |||| || | |  ||   |||  |  |||  ||   |||| |||||  | | || |  || |   || || ||     ||| |  |   ||  ||||   ||||| ||||| |||||||||||||||||||| || ||  |||| |||||||  || || || |||||||||
-----------------------------------------------------------------------------------gttgtcgg-tgaaactcc-tggcagacgttactt---tatc-tgaaatttgagttgtggcattgtaataagaatttcctcttat-gtatattcttatt---ttgttccagGTTTTAAACTTCATGTGGCTAAAGTTCTTTTTGATGTGGCGCTACTTTCGATTATGGTCACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208331653|gb|GE132366.1|GE132366
EST:     ATTTGTGGAAGCACTTATCTCCTATGGACGTGTTCATCATTGGATATGGC                         GTATTAAACTTCATGTGGCTAAAATTTTTACTGAT
genomic: ATTTGTGGAAGCACTTATCTCCTATGGACGTGTTCATCATTGGATATGGCgtaagagaat ... tttgtttcagGTGTTAAACTTCATGTGGCTAAAATTTTTACTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccaattatatcagcatgctgccttgtcattcttttctatttatttgtttcagGTGTTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGCTTCTGGTCACTG
                               ttcttttctatttatt  CT-rich tract
                              attcttttctatttat  TA-rich tract