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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtggttaattgcttgaatagttgcatttactgttgattaactatgtagatttaatattgaggccaaaactaaacattctaattatttttaactgggcagATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG

Basic information

species Glycine max
transcript GLYMA20G24070.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24070.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 11
-ggtggttaattgcttgaatagttgcatttactgttgattaactatgtagatttaatattgaggccaaaactaaacattctaattattttt-aactgggcagATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG
       |   | |||||| |  | || ||| | |   ||    || | ||    ||      |   |  |||| || | |  |  | ||| || ||  |||||||||||||||||||| |||||||||||||| ||||| || ||||||
aaaaaacttggttcttgaaaatatacaatta-tatccttttgtcatatggagcctatgg-attgttgaggctaagcaatgttttcttgtttgaattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120495604|gb|EH223771.1|EH223771
EST:     CGACAGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG
genomic: CGACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgggcagATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG
EST: gi|16276790|gb|BI942045.1|BI942045
EST:     ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCA
genomic: ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgggcagATATACCCACCAATCA
EST: gi|21256304|gb|BQ453192.1|BQ453192
EST:     TATCACTGAGGGGCAGATATACATCTTACTGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG
genomic: TATCACTGAGGGGCAGATATACATC-GACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgggcagATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG
EST: gi|193476671|gb|FK439532.1|FK439532
EST:     ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAACGTCCTCCCA
genomic: ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgggcagATATACCCACCAATCAACGTCCTCCCA
EST: gi|16279439|gb|BI943437.1|BI943437
EST:     ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAACGTCCTCCCATCACTATCTCAGTTGATGAAG
genomic: ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgggcagATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG
EST: gi|16276744|gb|BI942021.1|BI942021
EST:     ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG
genomic: ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgggcagATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG
EST: gi|37996030|gb|CF807619.1|CF807619
EST:     TGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG
genomic: TGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgggcagATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG
EST: gi|16278548|gb|BI942962.1|BI942962
EST:     ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAACGTGCTCCCATCACTATCTCGGTTGATGAAG
genomic: ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgggcagATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG
EST: gi|21601974|gb|BQ612305.1|BQ612305
EST:     GGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG
genomic: GGCAGCTGTATAATAGACAGgtgggttatg ... aactgggcagATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG
EST: gi|19346883|gb|BM891771.1|BM891771
EST:     ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAACGTCCTCCCA
genomic: ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgggcagATATACCCACCAATCAACGTCCTCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagatttaatattgaggccaaaactaaacattctaattatttttaactgggcagATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG
                                         ttttaac  putative branch site (score: 2)
                    aaaactaaacattcta  TA-rich tract