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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttttccatcccctcctcagtatctcattttaatcaagcttggcaacaatgtatttaataattcttcccgttttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATATTCCGGATAGTTATATTTCAGTCGTAGTGTTTTTTGTTTTCCCTAGATA

Basic information

species Glycine max
transcript GLYMA20G23080.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31474449|gb|CD416477.1|CD416477
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCCAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|207785021|gb|GD756098.1|GD756098
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|213591613|gb|DB975302.1|DB975302
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|193670428|gb|FK611544.1|FK611544
EST:     GGAAGAGGGTGTACGT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: GGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|193436947|gb|FK402576.1|FK402576
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAC                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|254348440|gb|GR852119.1|GR852119
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|9440151|gb|BE440661.1|BE440661
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|6913341|gb|AW394871.1|AW394871
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|10848082|gb|BF070635.1|BF070635
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|31455934|gb|CD397962.1|CD397962
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|207745658|gb|GD714990.1|GD714990
EST:     GGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: GGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|6914827|gb|AW396357.1|AW396357
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|207797867|gb|GD770909.1|GD770909
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208147176|gb|GD944899.1|GD944899
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|7285731|gb|AW598218.1|AW598218
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208136751|gb|GD939697.1|GD939697
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|6913405|gb|AW394935.1|AW394935
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208305484|gb|GE105383.1|GE105383
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGACAAAACGGAATAAAG
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTG-CAAAACGGA-TAAAG
EST: gi|208195920|gb|GD994439.1|GD994439
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|13482210|gb|BG511553.1|BG511553
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|213601764|gb|DB982489.1|DB982489
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208042253|gb|GD839531.1|GD839531
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|193640916|gb|FK588947.1|FK588947
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208094493|gb|GD891628.1|GD891628
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|254348439|gb|GR852118.1|GR852118
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|193637475|gb|FK584470.1|FK584470
EST:     GGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: GGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|193555675|gb|FK513222.1|FK513222
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaatcaagcttggcaacaatgtatttaataattcttcccgttttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATATTCCGGATAGTTATATTTCAGTCGTAGTGTTTTTTGTTTTCCCTAGATA
                                  ttcttcccgttttatt  CT-rich tract
                 aacaatgtatttaata  TA-rich tract