Sequence
atgc intronic sequence ATGC exonic sequence...ttttcttttaatttatcttatttaagtaatagatttaaaccttttcttcagtcttccctacataagttctgaatcagacaattaatgatgagttgtgtagGTTTATGACACTTCAGGTTCTTCGGAAGGGTACACATCTGCGGCTTTTCATCCGGATGGTCTCATTCTTGGAACCGGCACCACAGAATCTCTTGTCAAGA
Basic information
species | Glycine max |
transcript | GLYMA20G21330.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G21330.1 (Glycine max), 3'ss of exon 12
lower sequence: AT1G04510.1 (Arabidopsis thaliana), 3'ss of exon 12
----------------------------------------ttttcttttaatttatcttatttaagtaatagatttaaaccttttcttcagtcttccctacataagtt---ctgaatcagacaattaatgatgagttgtgtagGT-------TTATGACACTTCAGGT--------TCTTCGGAAGGG--------TACACATCTGCGGCTTTTCATCCGGATGGTCTCATTCTTGGAACCGGCACCACAGAATCTCTTGTCAAGA
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gtctccaaaattttaatccacacctgatacctgttatccagtttcagatttcttcttttatgctaatataacaatgaaacatttaccttctttattgtaatgtgaattagactcgttagaataaatgtttctgccatgcgtctttctcattattgttgttattcagGTGACAGATGCTTCCGAAAACGACGTGAATTACACGGCTGCTGCTTTTCATCCTGATGGTCTCATTCTTGGAACTGGTACCGCTCAATCTATTGTTAAGA
upper sequence: GLYMA20G21330.1 (Glycine max), 3'ss of exon 12
lower sequence: AT2G33340.1 (Arabidopsis thaliana), 3'ss of exon 12
ttttcttttaatttatcttatttaagtaata-gatttaaaccttttcttcagtcttccctacataagttctgaatcagacaattaatgatgagttgtgtagGTTTATGACACTTCAGGTTCTTCGGAAGGGTACACATCTGCGGCTTTTCATCCGGATGGTCTCATTCTTGGAACCGGCACCACAGAATCTCTTGTCAAGA---
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agcattttcatatcagctaaaatccgtggttcggtgtatggttagagtacgagctcctttactcatgaaagcctttgtcatattccttgttt-ttattcagGTATCAGATGATTCAAAGAAT---GTAGATTACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTGTTGTTAAGATTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193731316|gb|FK666640.1|FK666640EST: ATGGCTCTTGGTGCTTTTATGAACTTTCTTCAGGGACGTGTTTGACTCAG GTTTATGGCACTTCAGGTTCTTCGGAAGGGTACACATCTGCGGTCTTTTCA
genomic: ATGGCTCTTGGTGCTTTTATGAACTTTCTTCAGGGACGTGTTTGACTCAGgtatgatctc ... agttgtgtagGTTTATGACACTTCAGGTTCTTCGGAAGGGTACACATCTGCGG-CTTTTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttcagtcttccctacataagttctgaatcagacaattaatgatgagttgtgtagGTTTATGACACTTCAGGTTCTTCGGAAGGGTACACATCTGCGGCTTTTCATCCGGATGGTCTCATTCTTGGAACCGGCACCACAGAATCTCTTGTCAAGA
aattaat putative branch site (score: 3)
aattaatgat TA-rich tract