Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagcaacatgtggcatgtgggggctgtttaaaacctcggatacaatcgtgaagtttgatatttctaaaagtgacactcttgtaaaatgcagTTCACCTTGTCGGGTCACACTGAACAGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATG

Basic information

species Glycine max
transcript GLYMA19G42900.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42900.1 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 3'ss of exon 13
--------gtaagagcaacatgtggcatgtgggggctgtttaaaacctcggatacaatcgtgaagtttga--tatttctaaaagtgacactcttgtaaaa---tgcagTTCACCTTGTCGGGTCACACTGAACAGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATG
          | |   ||| ||   | | ||   |   |||  |||| |    ||| |  |  | |   |  || |   | | || ||  ||| ||||||   |||||||||||   || ||||| ||||||  ||||| |||||| |||||||||||||||||  | | |||||| ||  |||||||||||
gtgatgtttgatggttaacctgcctc-tctgaaagtgatttggaaccactaccacattaatttactaaaacctagtctgatatgtaacgttctcgtaaaactttgcagTTCACCGCATCTGGTCATACTGAATTGCGAATCAATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATG

upper sequence: GLYMA19G42900.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G063492_T01 (Zea mays), 3'ss of exon 13
------gtaagagcaacatgtggcatg--tgggggctgtt--taaaacctcggatacaatcg--tgaagtttgata---------tttctaaaagtgacactcttgtaaaatgcagTTCACCTTGTCGGGTCACACTGAACAGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATG
       |   ||| |  | |    ||  | |   ||| |   | |   |   ||   || |  |||   |  |||         | | || ||  | |  | |   |   ||||||| ||    || ||||||||||||  ||||  |||||| |||||||||||||||||  ||| |||||| ||  |||||||||||
gtgatgtttgcagcgaattctcatctgctttgaacctgctatcagatttttacatgtcattgcttgagcatctataggaggctcttctttacaataggccatgtaaaattttgcagTTTACAGCATCTGGTCACACTGAAGTGCGAGTCAATGCTATCATGATCACCAGCACAGTTATTGTTGTTCTATTCAGCACAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggatacaatcgtgaagtttgatatttctaaaagtgacactcttgtaaaatgcagTTCACCTTGTCGGGTCACACTGAACAGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATG
                         ttctaaa  putative branch site (score: 2)
                                       ctcttgt  putative PPT
                 tttgatatttctaaaa  TA-rich tract