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...gcatcaaatcacagtagagtagatatgtttgggtattcctcttttatttatctaattgaacaaatccgatgctgtgtgtatgctttatttctttaagcagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTACTTGAGAAGTTGAGAAATACAGATCGTGCATATTACCAGTTGTGCCACC
species | Glycine max |
transcript | GLYMA19G41400.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATATAGCAAAGAATTTACTTGGGGCAGACTTTGCTGCAGAATTATCAAAG ACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTEST: gi|14999781|gb|BI320595.1|BI320595
genomic: ATATAGCAAAGAATTTACTTGGGGCAGACTTTGCTGCAGAATTATCAAAGgtattttata ... ctttaagcagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGT
EST: ATATAGCAAAGAATTTACTTGGGGCAGACTTTGCTGCAGAATTATCAAAG ACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTAEST: gi|21602683|gb|BQ613014.1|BQ613014
genomic: ATATAGCAAAGAATTTACTTGGGGCAGACTTTGCTGCAGAATTATCAAAGgtattttata ... ctttaagcagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTA
EST: ATATAGCAAAGAATTTACTTGGGGCAGACTTTGCTGCAGAATTATCAAAG ACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTA
genomic: ATATAGCAAAGAATTTACTTGGGGCAGACTTTGCTGCAGAATTATCAAAGgtattttata ... ctttaagcagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTA
atttatctaattgaacaaatccgatgctgtgtgtatgctttatttctttaagcagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTACTTGAGAAGTTGAGAAATACAGATCGTGCATATTACCAGTTGTGCCACC
atctaat putative branch site (score: 3)
tgctttatttcttt putative PPT
tttatttctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatcaaatcacagtagagtagatatgtttgggtattcctcttttatttatctaattgaacaaatccgatgctgtgtgtatgctttatttctttaagcagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTACTTGAGAAGTTGAGAAATACAGATCGTGCATATTACCAGTTGTGCCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - aatcaca
- - - - - - - - - - - - - gtttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgct