Sequence
atgc intronic sequence ATGC exonic sequencegttttttatctgcttgaaatatttatcctttagcaaaatattttcttttatattgcttctaacaagtggtgtttctgttcttggcttaatagGATCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCACTTCTGCGCCCTGGTCGATTTGACAAACTGCTATATGTCGGAGTTAACT
Basic information
species | Glycine max |
transcript | GLYMA19G39580.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G39580.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv07s0104g01610.t01 (Vitis vinifera), 3'ss of exon 12
---------------------------------------------------------------gttttttatctgcttgaaatatttatcctttagcaaaatattttcttttatattgcttctaacaagtggtgtttctgttcttggcttaatagGATCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCACTTCTGCGCCCTGGTCGATTTGACAAACTGCTATATGTCGGAGTTAACT
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gttctttaaacttcttaatatattcattttccttcttttttttcagtttctttctatgttcatgttgtttctttctctctttttcttttctttttcccctccttttttgcttctaat-cccacaatacactct-tttttctttctggtttaccagGACTTGTTTATTATAGGGGCAAGCAACAGACCTGATCTTATTGACCCTGCACTTCTCCGACCTGGCCGATTTGACAAGCTGCTATATGTTGGAGTTAACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209717880|gb|BW666071.1|BW666071EST: CAGATGCTTGCAGAGATTGATGGGTTAAGTGATTCCACACAG GATCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCA
genomic: CAGATGCTTGCAGAGATTGATGGGTTAAGTGATTCCACACAGgttttttatc ... ggcttaatagGATCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atattttcttttatattgcttctaacaagtggtgtttctgttcttggcttaatagGATCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCACTTCTGCGCCCTGGTCGATTTGACAAACTGCTATATGTCGGAGTTAACT
ttctaac putative branch site (score: 1)
ttcttttatatt TA-rich tract