Sequence
atgc intronic sequence ATGC exonic sequencegttatagtcaaatacctcttcattttattagaatatgttttgtgcaatactgagtctttagttttatagAGCTGCCATGATGGAATTTGAGATCAATATGTCTGAAATGCCACTTGGGAAATTGAGCAAAAGCAACATCCAAAAGG
Basic information
species | Glycine max |
transcript | GLYMA19G34580.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G34580.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM5G831712_T02 (Zea mays), 3'ss of exon 12
-------------------------gttatagtcaaatacctcttcatttta-----ttagaatatgttttgtgcaatactgagtctttagttttat-agAGCTGCCATGATGGAATTTGAGATCAATATGTCTGAAATGCCACTTGGGAAATTGAGCAAAAGCAACATCCAAAAGG
| ||| ||| | || ||| | ||| | | | | | | | || |||| |||| |||||||| |||||||||||||| || |||||||| |||||||| |||||||| | ||||| || || | || |
acttatgggttatgttgggtttttaactttagccaacttgcttgggattaaaaggctttattgttgttcctctattaaagtaagcctttttttttgccagAGCTGCTATGATGGAATTTGAAATTAATATGTCAGAAATGCCTCTTGGGAAGCTAAGCAAGGAAAATATTGAGAAAG
upper sequence: GLYMA19G34580.1 (Glycine max), 3'ss of exon 12
lower sequence: AT2G31320.1 (Arabidopsis thaliana), 3'ss of exon 11
---------------gttatagtcaaatacctct-tcattttattagaatatgttttgtgcaatactgagtctttagttttatagAGCTGCCATGATGGAATTTGAGATCAATATGTCTGAAATGCCACTTGGGAAATTGAGCAAAAGCAACATCCAAAAGG
| || ||| | | || | | | ||||| ||| | | || | | | ||| || ||| |||| |||||||| || ||||| |||||||| || |||||||||||||| | |||||| || || || ||||
gttagaaacttatttgccattgtcttcttctcctcttctctccctagaaactgtatgaagtaa--cctaataattacttccgcagATCTGCAATGATGGAGTTCGAGATAAATATGTCAGAGATGCCACTTGGGAAGCTCAGCAAACATAATATACAGAAGG
upper sequence: GLYMA19G34580.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv07s0005g03040.t01 (Vitis vinifera), 3'ss of exon 12
gttatagtcaaatacctcttcattt---tattagaatatgttttgtgcaatactgagtct------------ttagttttatagAGCTGCCATGATGGAATTTGAGATCAATATGTCTGAAATGCCACTTGGGAAATTGAGCAAAAGCAACATCCAAAAGG
||||| | || || || || ||| | || | || | || | || | || ||| | ||| || ||| ||||||||||||||||||| || |||||||| |||||||||||||| || |||| ||||| ||||| || ||||
gttattgcaaattatcttgtcttttctcttttgggatttattcc-tagaaaattgtatctgaaatactgaaataagtcttgcagATCTGCCATGATGGAATTTGAAATTAATATGTCAGAAATGCCACTTGGAAAGCTGAGTAAAAGTAACATACAGAAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctcttcattttattagaatatgttttgtgcaatactgagtctttagttttatagAGCTGCCATGATGGAATTTGAGATCAATATGTCTGAAATGCCACTTGGGAAATTGAGCAAAAGCAACATCCAAAAGG
tcattttattagaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttatagtcaaatacctcttcattttattagaatatgttttgtgcaatactgagtctttagttttatagAGCTGCCATGATGGAATTTGAGATCAATATGTCTGAAATGCCACTTGGGAAATTGAGCAAAAGCAACATCCAAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA