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gtttgatcatttgggttctaacaaacactcttctaattcattattcatcaattgtttatttatgcataatctaatatatgaatgctcaatctgattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCTTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACA
species | Glycine max |
transcript | GLYMA19G30460.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCEST: gi|193618949|gb|FK569363.1|FK569363
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG GCTTTTGTTAGTGAATACGCTGTGEST: gi|193386273|gb|FK349451.1|FK349451
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTG
EST: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCEST: gi|208154130|gb|GD956163.1|GD956163
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCEST: gi|193354959|gb|FK322568.1|FK322568
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: TTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG GC-TTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCEST: gi|193511194|gb|FK468463.1|FK468463
genomic: TTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: CGACAACACATCACGATCTGGTCCAAAG GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCEST: gi|193471512|gb|FK436613.1|FK436613
genomic: CGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAGG GCTTTTGTTAGTGAATACGCTGTGEST: gi|208052506|gb|GD851341.1|GD851341
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTG
EST: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCEST: gi|193390214|gb|FK355448.1|FK355448
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCEST: gi|193584136|gb|FK540284.1|FK540284
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAGG GCTTTTGTTAGTTGTAATACGCTGTGEST: gi|208058249|gb|GD860254.1|GD860254
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGT-G-AATACGCTGTG
EST: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCEST: gi|208112736|gb|GD909731.1|GD909731
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCEST: gi|193703732|gb|FK640934.1|FK640934
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCEST: gi|193583057|gb|FK539685.1|FK539685
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCEST: gi|208288352|gb|GE084365.1|GE084365
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCEST: gi|193703286|gb|FK638262.1|FK638262
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAGG GCTTTTGTTAGTGAAEST: gi|6724799|gb|AW309198.1|AW309198
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAA
EST: CTAAGTTCGACAACACATCACGATCTGGTCCAAAG GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
genomic: CTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
tcaattgtttatttatgcataatctaatatatgaatgctcaatctgattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCTTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACA
tttatttatgcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatcatttgggttctaacaaacactcttctaattcattattcatcaattgtttatttatgcataatctaatatatgaatgctcaatctgattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCTTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC