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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctgagtaatctgtttttgtgatctgaatcacttcattaaatactttttttatgtgctgttctagctcttattttgaatcaatgtgttctagGTTGGTGATTGCTTGGGAACTTTGATAAAAACATTCAGGACATCTTTCTTGCCTTTCTTTGATGAGCTGTCCTCATACCTAACACCTTTGTTT

Basic information

species Glycine max
transcript GLYMA19G29010.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G29010.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv08s0007g07240.t01 (Vitis vinifera), 3'ss of exon 12
-------------------gtatgctgagtaatctgtttttgtgatctgaatcacttcattaaa-tactttttttatgtgc-tgttctagctcttatt----ttgaatcaatgt-gttctagGTTGGTGATTGCTTGGGAACTTTGATAAAAACATTCAGGACATCTTTCTTGCCTTTCTTTGATGAGCTGTCCTCATACCTAACACCTTTGTTT
                    |||| |||  ||  ||  ||||| |  |||     |   ||    | |||||    |||   |||  |   |||| ||    ||   ||  | |   |  || | |||||||||||||| |||||||| ||||| |||| | | |||||||||||||||||||||||||| || || ||||| |  ||| |||  
gtatgctcttcagacatatttatgttga--aaattgggtttgttagttgatcggttgtgttctcctgcttttagattgtaaatgtgttgattcttgttgcctttatgtcctttttaatacagATCGGTGATTGCTTGGGCACTTTGATCAAAACCTTCAAGTCTTCTTTCTTGCCTTTCTTTGATGAGCTTTCATCTTACCTGATGCCTATGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20449243|gb|BQ253367.1|BQ253367
EST:     GAGAACTACTCAATGAAGAAAATGAGCAAGAAGAGGAGCTTTTTGATCAA                         GCTGGTGATTGCTTGGGAACTTTGATAAAAACATTCAGGACATCTTTCTTG
genomic: GAGAACTACTCAATGAAGAAAATGAGCAAGAAGAGGAGCTTTTTGATCAAgtatgctgag ... tgtgttctagGTTGGTGATTGCTTGGGAACTTTGATAAAAACATTCAGGACATCTTTCTTG
EST: gi|17023096|gb|BM094130.1|BM094130
EST:     GAGAACTACTCAATGAAGAAAATGAGCAAGAAGAGGAGCTTTTTGATCAA                         GTTGGTGATTGCTTGGGAACTTTGATAAAAACATTCAGGACATCTTTCTTG
genomic: GAGAACTACTCAATGAAGAAAATGAGCAAGAAGAGGAGCTTTTTGATCAAgtatgctgag ... tgtgttctagGTTGGTGATTGCTTGGGAACTTTGATAAAAACATTCAGGACATCTTTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatactttttttatgtgctgttctagctcttattttgaatcaatgtgttctagGTTGGTGATTGCTTGGGAACTTTGATAAAAACATTCAGGACATCTTTCTTGCCTTTCTTTGATGAGCTGTCCTCATACCTAACACCTTTGTTT
                               ttattttgaatcaat  TA-rich tract