1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tccctgtatctgaaagaaagaacagtgcatgaagtttgattttgaaaaaccatgatgcatagaataaagtaatttctgaatactatgacggatttcgtagGTCAATTACAAATGCATATAGTTGAATCACGGCTCATTGAACAATGATGCAAGAGTTCCGGATTTAAAAGGTTATGGGTCTGCCTTTCCCCCTGAAGATA
species | Glycine max |
transcript | GLYMA19G22520.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTGGAAATGTATGTAGTCTGAACTGTACAAATATGGATTTGATGAACCAG GTCAATTACAAATGCATATAGTTGAATCACGGCTCATTGAACAATGATGCAEST: gi|214005285|gb|DB985127.1|DB985127
genomic: CTGGAAATGTATGTAGTCTGAACTGTACAAATATGGATTTGATGAACCAGgtcagtcaaa ... gatttcgtagGTCAATTACAAATGCATATAGTTGAATCACGGCTCATTGAACAATGATGCA
EST: CTGGAAATGTATGTAGTCTGAACTGTACAAATATGGATTTGATGAACCAG GTCAATTACAAATGCATATAGTTGAATCACGGCTCATTGAACAATGATGCAEST: gi|213604159|gb|DB984196.1|DB984196
genomic: CTGGAAATGTATGTAGTCTGAACTGTACAAATATGGATTTGATGAACCAGgtcagtcaaa ... gatttcgtagGTCAATTACAAATGCATATAGTTGAATCACGGCTCATTGAACAATGATGCA
EST: CTGGAAATGTATGTAGTCTGAACTGTACAAATATGGATTTGATGAACCAG GTCAATTACAAATGCATATAGTTGAATCACGGCTCATTGAACAATGATGCAEST: gi|11689987|gb|BF597663.1|BF597663
genomic: CTGGAAATGTATGTAGTCTGAACTGTACAAATATGGATTTGATGAACCAGgtcagtcaaa ... gatttcgtagGTCAATTACAAATGCATATAGTTGAATCACGGCTCATTGAACAATGATGCA
EST: CTGGAAATGTATGTAGTCTGAACTGTACAAATATGGATTTGATGAACCAG GTCAATTACAAATGCATATAGTTGAATCACGGCTCATTGAACAATGATGCAEST: gi|5666751|gb|AI930787.1|AI930787
genomic: CTGGAAATGTATGTAGTCTGAACTGTACAAATATGGATTTGATGAACCAGgtcagtcaaa ... gatttcgtagGTCAATTACAAATGCATATAGTTGAATCACGGCTCATTGAACAATGATGCA
EST: CTGGAAATGTATGTAGTCTGAACTGTACAAATATGGATTTGATGAACCAG GTCAATTACAAATGCATATAGTTGAATCACGGCTCATTGAACAATGATGCA
genomic: CTGGAAATGTATGTAGTCTGAACTGTACAAATATGGATTTGATGAACCAGgtcagtcaaa ... gatttcgtagGTCAATTACAAATGCATATAGTTGAATCACGGCTCATTGAACAATGATGCA
aaaaccatgatgcatagaataaagtaatttctgaatactatgacggatttcgtagGTCAATTACAAATGCATATAGTTGAATCACGGCTCATTGAACAATGATGCAAGAGTTCCGGATTTAAAAGGTTATGGGTCTGCCTTTCCCCCTGAAGATA
atagaataaagtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccctgtatctgaaagaaagaacagtgcatgaagtttgattttgaaaaaccatgatgcatagaataaagtaatttctgaatactatgacggatttcgtagGTCAATTACAAATGCATATAGTTGAATCACGGCTCATTGAACAATGATGCAAGAGTTCCGGATTTAAAAGGTTATGGGTCTGCCTTTCCCCCTGAAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
-ccctgta
- - - - - - aaagaaa
- - - - - - - - - - - - - gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - -ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaataaa