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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacaatattttcaatttcgtcccatattttttaaggaaagatcaaataagggagtgcttatgacctctttgtttttgttacatgacagACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCTGTAGAAGCCCCATTAACACCAGAATTAAGCTTTACTAGGCGGCCTCTTCCGTTGTGA

Basic information

species Glycine max
transcript GLYMA19G07140.3
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G07140.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv14s0066g00290.t01 (Vitis vinifera), 3'ss of exon 10
gtaaaacaatattttcaatttcgtcccatattttttaaggaaagatcaaataagggagtgcttatgacctctttgtttttgttacatgacagACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCTGTAGAAGCCCCATTAACACCAGAATTAAGCTTTACTAGGCGGC--CTCTTCCGTTGTGA
|||||  |    | | ||||  |    || | |  |    |||||    |||  |||  | || |    | ||  |||   ||   |  ||||| |||||||||||||||| ||||||| || ||||||| || ||  ||||||| ||  | |||||||| ||||||||||| || ||  |||| || || |  
gtaaa-tacctctatgaatt--gattgatttgtgcttgttaaagacgggatactgga-cgttttt--ttttttaatttgctttttcttgcagACTTGTTGTGAATGTGGACCAGATCTTGAGACGTGTCCAATTTGCCGAAGCCCAATCCAAACCAGAATAAAGCTTTACTAAGCAGCATCTCTGCCTTTTT--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016327|gb|CX703069.1|CX703069
EST:     CCATATGTCTGACCAATTCAAAAGACATGGCCTTCGGATGTGGACATCAG                         ACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCTGTAGAAGC
genomic: CCATATGTCTGACCAATTCAAAAGACATGGCCTTCGGATGTGGACATCAGgtaaaacaat ... tacatgacagACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCTGTAGAAGC
EST: gi|19270006|gb|BM886262.1|BM886262
EST:     CCATATGTCTGACCAATTCAAAAGACATGGCCTTCGGATGTGGACATCAG                         ACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCT
genomic: CCATATGTCTGACCAATTCAAAAGACATGGCCTTCGGATGTGGACATCAGgtaaaacaat ... tacatgacagACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCT
EST: gi|208294560|gb|GE089983.1|GE089983
EST:     CCATATGTCTGACCAATTCAAAAGACATGGCCTTCGGATGTGGACATCAG                         ACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCTGTAGAAGC
genomic: CCATATGTCTGACCAATTCAAAAGACATGGCCTTCGGATGTGGACATCAGgtaaaacaat ... tacatgacagACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCTGTAGAAGC
EST: gi|58022723|gb|CX709464.1|CX709464
EST:     CCATATGTCTGACCAATTCAAAAGACATGGCCTTCGGATGTGGACATCAG                         ACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCTGTAGAAGC
genomic: CCATATGTCTGACCAATTCAAAAGACATGGCCTTCGGATGTGGACATCAGgtaaaacaat ... tacatgacagACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCTGTAGAAGC
EST: gi|51334738|gb|CO978604.1|CO978604
EST:     CCATATGTCTGACCAATTCAAAAGACATGGCCTTCGGATGTGGACATCAG                         ACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCTGTAGAAGC
genomic: CCATATGTCTGACCAATTCAAAAGACATGGCCTTCGGATGTGGACATCAGgtaaaacaat ... tacatgacagACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCTGTAGAAGC
EST: gi|6566921|gb|AW234553.1|AW234553
EST:     CCATATGTCTGACCAATTCAAAAGACATGGCCTTCGGATGTGGACATCAG                         ACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCTGTAGAAGC
genomic: CCATATGTCTGACCAATTCAAAAGACATGGCCTTCGGATGTGGACATCAGgtaaaacaat ... tacatgacagACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCTGTAGAAGC
EST: gi|193406093|gb|FK370950.1|FK370950
EST:     CTTCGGATGTGGACATCAG                         ACATGTTGTGAATGTGGACAAGA
genomic: CTTCGGATGTGGACATCAGgtaaaacaat ... tacatgacagACATGTTGTGAATGTGGACAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggaaagatcaaataagggagtgcttatgacctctttgtttttgttacatgacagACATGTTGTGAATGTGGACAAGATCTTCAGTCGTGTCCCATCTGTAGAAGCCCCATTAACACCAGAATTAAGCTTTACTAGGCGGCCTCTTCCGTTGTGA
                              cctctttgtttttgtt  CT-rich tract
       atcaaataa  TA-rich tract