Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taaggttaatcttgttcgtttgatgtcaaaatggcaccaacagataaatttgtgacgttttggatgggtgagtggtgcctaccactggattccatccaacaatcactaaagactctgcaacttgttttcctggctaaagcagcattacccttattagttcaaaaagtaaatttttaaggtttgcttatgcagaGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAGG

Basic information

species Glycine max
transcript GLYMA18G48280.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 12
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 3'ss of exon 13
taaggttaatcttgttcgtttgatgtcaaaatggcaccaacagataaatttgtgacgttttggatgggtgagtggtgcctaccactggattccatccaacaatcactaaagactctgcaacttgttttcctggctaaagcagcattacccttattagttcaaaaagtaaatttttaaggtttgcttatgcagaGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAGG
                                                                                                    ||        || ||   ||       |  | | | ||||   || | |  |  ||     || | | | ||| ||           |||||||||||||||||||||| ||||| || | ||| || |||||||| || || ||  
--------------------------------------------------------------------------------------------------gtaagtgtgggggattcaaaaa-------taatagatgaagccaaatgatcgattgtaaacgtaacaatgactttgtat----------tgcagAGTGCCATTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAA-

upper sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 12
taaggttaatcttgttcgtttgatgtcaaaatggcaccaacagataaatttgtgacgttttggatgggtgagtggtgcctaccactggattccatccaacaatcactaaagactctgcaacttgttttcctggctaaagcagcattacccttattagttcaaaaagtaaatttttaaggtttgcttatgcagaGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAGG
                                                                               || |  ||      ||   | || | ||||   ||| |  | || |||   |||         ||     ||||      ||  | ||||| | ||     || ||   ||||||||||||||||||||| ||||| || | ||||||| | ||||| ||||| ||| 
------------------------------------------------------------------------------gtaaccttg---cttattgcataagccctaa--gctcggagattt-tttaaatggaagttctgacaaggggctta------catcatgtaaaatgttggtaattcct---gcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG-

upper sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 12
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 3'ss of exon 12
taaggttaatcttgttcgtttgatgtcaaaatggcaccaacagataaatttgtgacgttttggatgggtgagtggtgcctaccactggattccatccaacaatcactaaagactctgcaacttgttttcctggctaaagcagcattacccttattagttcaaa--aagtaaatttttaaggtttgcttatgcagaGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAGG
                                                                           ||  | |   |  | |   |||      |||| ||   |  |      || |   ||  | | | | |||| |  ||  | |||   |  || | | ||  |     |  ||  |||||||||| |||||  |||||||||| ||||||||||||||||| || || |||||| 
---------------------------------------------------------------------------tgtttgctttttaagtatttcc------cacttaacgtttag------gtgtgattgagttatgtatcatttcgatt--tggttgggactaactgagttcct-----tcactcctgcagAGTGCTATTGGACAGGGAATGACTCGAAAGGATCATTCTGAAGTCTCTAACCAG-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16279334|gb|BI943381.1|BI943381
EST:     TATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGA                         GTGCCATGGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
genomic: TATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGGtaaggttaat ... cttatgcagaGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
EST: gi|193493069|gb|FK463011.1|FK463011
EST:     TATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGA                         GTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
genomic: TATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGGtaaggttaat ... cttatgcagaGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
EST: gi|10254574|gb|BE822340.1|BE822340
EST:     TCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGA                         GTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
genomic: TCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGGtaaggttaat ... cttatgcagaGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
EST: gi|6666329|gb|AW277788.1|AW277788
EST:     CCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGA                         GTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
genomic: CCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGGtaaggttaat ... cttatgcagaGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
EST: gi|16277692|gb|BI942513.1|BI942513
EST:     TATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGA                         GTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
genomic: TATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGGtaaggttaat ... cttatgcagaGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
EST: gi|192296018|gb|FG989412.1|FG989412
EST:     TATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGA                         GTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
genomic: TATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGGtaaggttaat ... cttatgcagaGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
EST: gi|22933182|gb|BU550321.1|BU550321
EST:     TATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGA                         GTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
genomic: TATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGGtaaggttaat ... cttatgcagaGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
EST: gi|16281557|gb|BI944549.1|BI944549
EST:     TATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAAA                         GTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC
genomic: TATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGGtaaggttaat ... cttatgcagaGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagcattacccttattagttcaaaaagtaaatttttaaggtttgcttatgcagaGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAGG
                                         tttgctt  CT-rich tract
            ttattagttcaaaaag  TA-rich tract