1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatgttatttagaattaatctatttgtatgatttctatcctctgatgttaaggaggatgatgtcttacattaggcaagagtttatctttgctataatgtaatttacaagcaagtaatactgttattctttctttcagATATCTTCCGTTTGGTGGCGGACCACGGAAATGTGTAGGTGATTTGTTTGCTTCCTACGAG
species | Glycine max |
transcript | GLYMA18G47500.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGATGGGCATTAGATGGACCAAGTCCTAATGAGACAAATCAAAACTTCAA ATATCTTCCGTTEST: gi|22927034|gb|BU544173.1|BU544173
genomic: AGATGGGCATTAGATGGACCAAGTCCTAATGAGACAAATCAAAACTTCAAgtatgttatt ... tttctttcagATATCTTCCGTT
EST: AGATGGGCANTAGATGGACCAAGTCCTAATGAGACAAATCAAAACTTCAA ATATCTTCCGTTTGGTGGCGGACCACGGAAATGTGTAGGTGATTTGTTTGCEST: gi|15287455|gb|BI471346.1|BI471346
genomic: AGATGGGCATTAGATGGACCAAGTCCTAATGAGACAAATCAAAACTTCAAgtatgttatt ... tttctttcagATATCTTCCGTTTGGTGGCGGACCACGGAAATGTGTAGGTGATTTGTTTGC
EST: GATGGACCAAGTCCTAATGAGACAAATCAAAACTTCAA ATATCTTCCGTTTGGTGGCGGACCACGGAAATGTGTAGGTGATTTGTTTGC
genomic: GATGGACCAAGTCCTAATGAGACAAATCAAAACTTCAAgtatgttatt ... tttctttcagATATCTTCCGTTTGGTGGCGGACCACGGAAATGTGTAGGTGATTTGTTTGC
tatctttgctataatgtaatttacaagcaagtaatactgttattctttctttcagATATCTTCCGTTTGGTGGCGGACCACGGAAATGTGTAGGTGATTTGTTTGCTTCCTACGAG
ctgttattctttcttt CT-rich tract
tataatgtaatttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttatttagaattaatctatttgtatgatttctatcctctgatgttaaggaggatgatgtcttacattaggcaagagtttatctttgctataatgtaatttacaagcaagtaatactgttattctttctttcagATATCTTCCGTTTGGTGGCGGACCACGGAAATGTGTAGGTGATTTGTTTGCTTCCTACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG