Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaagctgaagcatcttagtacaaagatgtaacacatgttcatctgatttgacaaatctaattcctgagccgcagGTATACTTTTGGGTGATTGGAAGCAACTTTGTTCTGCGCTGCTCTTGGACATACAAATTATCTGCCCATCTCCGCCATAACTACCTGACAGTGTTTACTA

Basic information

species Glycine max
transcript GLYMA18G46260.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46260.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G142660_T01 (Zea mays), 3'ss of exon 11
--------gtaagaagctgaa-gcatcttagtacaaagatgtaacacatgttcatctgatttgacaaatctaattcctgagccgcagGTATACTTTTGGGTGATTGGAAGCAACTTTGTTCTGCGCTGCTCTTGGACATACAAATTATCTGCCCATCTCCGCCATAACTACCTGACAGTGTTTACTA
         | |  |  | || || |||||||  |       ||||  |  ||| | | | ||  |  |  || |  |      ||||||| ||  |||||  | || |||||||| |||||||| ||| | |||||||||||  | || || |||||||| || ||||||||||||||||| || |
gtatcgacctgaacacataaatgcttcttagttaactccatgaacagtttgtcacc-ggtctgttatgtacaaattgta-----cagGTATTCTACTGGGTACTGGGCAGCAACTTGGTTCTGCGATGCACATGGACATACAAGCTCTCGGCGCATCTCCGGCACAACTACCTGACAGTGTTCACCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaagatgtaacacatgttcatctgatttgacaaatctaattcctgagccgcagGTATACTTTTGGGTGATTGGAAGCAACTTTGTTCTGCGCTGCTCTTGGACATACAAATTATCTGCCCATCTCCGCCATAACTACCTGACAGTGTTTACTA
                                   atctaat  putative branch site (score: 3)
                                         ttcct  CT-rich tract
                                 aaatctaatt  TA-rich tract