1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
taagttggtgagaagcttaccattatcagttaagtaaaatcatttaccatttcttacattgaaaaaacaatgcagaACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGCAAGAAGTTGAATTCATTATTGAGCATTGTAAATGGGTTTTTGGATTAAT
species | Glycine max |
transcript | GLYMA18G45960.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTGCCAAATGGGCAATCATTGCCTCCATTGTTCGATTTCACTGCTCAAGA ACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGCEST: gi|151396011|gb|EV265888.1|EV265888
genomic: TTGCCAAATGGGCAATCATTGCCTCCATTGTTCGATTTCACTGCTCAAGGtaagttggtg ... acaatgcagaACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGC
EST: TTGCCAAATGGGCAATCATTGCCTCCATTGTTCGATTTCACTGCTCAAGA ACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGCEST: gi|10843847|gb|BF067095.1|BF067095
genomic: TTGCCAAATGGGCAATCATTGCCTCCATTGTTCGATTTCACTGCTCAAGGtaagttggtg ... acaatgcagaACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGC
EST: TTGCCGAATGGGCAATCATTGCCTCCATTGTTCGATTTCACTGCTCAAGA ACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGC
genomic: TTGCCAAATGGGCAATCATTGCCTCCATTGTTCGATTTCACTGCTCAAGGtaagttggtg ... acaatgcagaACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGC
attatcagttaagtaaaatcatttaccatttcttacattgaaaaaacaatgcagaACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGCAAGAAGTTGAATTCATTATTGAGCATTGTAAATGGGTTTTTGGATTAAT
ttcttac putative branch site (score: 2)
ttaagtaaaatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagttggtgagaagcttaccattatcagttaagtaaaatcatttaccatttcttacattgaaaaaacaatgcagaACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGCAAGAAGTTGAATTCATTATTGAGCATTGTAAATGGGTTTTTGGATTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT