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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttacatagacatgtatactgttttcttattattattacttatgtttctctgctagttcaacgtgtatatcctttatcttgttttggactaaccatgtgaatatttttttcttagCTGGCAGCATGTCGATCCCTATGTTTGCATATCGAAGATGCAAACTTTTCGGAAAGGGAGTTTGTTGATCTTCTTCCTATTTGTTGGGATTCATGTTTTA

Basic information

species Glycine max
transcript GLYMA18G43420.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43420.1 (Glycine max), 3'ss of exon 12
lower sequence: AT3G08960.1 (Arabidopsis thaliana), 3'ss of exon 12
gta-tgttacatagacatgtatactgttttcttattattattacttatgtttctctgctagttcaacgtgtatatcctttatcttgttttggactaaccatgtgaa-tatttttttct-tagCTGGCAGCATGTCGATCCCTATGTTTGCATATCGAAGATGCAAACTTTTCGGAAAGGGAGTTTGTTGATCTTCTTCCTATTTGTTGGGATTCATGTTTTA
||| | | |  |   |   | |    || | ||||  || |  |||   ||        | |    | | | | || ||     | ||   |||     |  | |  | |||  || | |||||||||||  || | ||  |||| || ||| |||| |||||||| ||||||||       ||| ||||||||||||| || ||||||||||||||||| |
gtagtctcatcttatctcatctttgtttcttttatctttctgtcttgcattaagggcacattctctcatttttttctttatatgtattggtgacctctgagatcatctgtttacttatgtagCTGGCAGCTAGTAGGTCATTATGCTTACATGTCGAGGATGCAAATTTTTCGGAGCAAAGTTTTCTTGATCTTCTTCCAATCTGTTGGGATTCATGTTTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgtgtatatcctttatcttgttttggactaaccatgtgaatatttttttcttagCTGGCAGCATGTCGATCCCTATGTTTGCATATCGAAGATGCAAACTTTTCGGAAAGGGAGTTTGTTGATCTTCTTCCTATTTGTTGGGATTCATGTTTTA
                          gactaac  putative branch site (score: 1)
                                         tatttttttctt  putative PPT
                                     tgaatatttttttctt  TA-rich tract