1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...cttttcttttcatatgattcataattcagtatttttcattataaaccattactttgtaacaaaaatgcaaaatagattaaaattcttacttatggttgcaGGATATCTACTTGGGGCTGATAAACCGTTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCA
species | Glycine max |
transcript | GLYMA18G43310.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CAAAGTGGATCTGTGTTGGCGCTATTGACATTACACAATTATCTGTAGCG GGATATCTACTTGGGGCTGATAAACCGTTTTATGCGTTAGCTTTACTTGGCEST: gi|15203846|gb|BI426614.1|BI426614
genomic: CAAAGTGGATCTGTGTTGGCGCTATTGACATTACACAATTATCTGTAGCGggtaaatttt ... tatggttgcaGGATATCTACTTGGGGCTGATAAACCGTTTTATGCGTTAGCTTTACTTGGC
EST: CAAAGTGGATCTGTGTTGGCGCTATTGACATTACACAATTATCTGTAGCG GGATATCTACTTGGGGCTGATAAACCGTTTTATGCGTTAGCTTTACTTGGCEST: gi|16276277|gb|BI941773.1|BI941773
genomic: CAAAGTGGATCTGTGTTGGCGCTATTGACATTACACAATTATCTGTAGCGggtaaatttt ... tatggttgcaGGATATCTACTTGGGGCTGATAAACCGTTTTATGCGTTAGCTTTACTTGGC
EST: CAAAGTGGATCTGTGTTGGCGCTATTGACATTACACAATTATCTGTAGCG GGATATCTACTTGGGGCTGATAAACCGTTTTATGCGTTAGCTNTACTTGGCEST: gi|16349016|gb|BI974611.1|BI974611
genomic: CAAAGTGGATCTGTGTTGGCGCTATTGACATTACACAATTATCTGTAGCGggtaaatttt ... tatggttgcaGGATATCTACTTGGGGCTGATAAACCGTTTTATGCGTTAGCTTTACTTGGC
EST: CAAAGTGGATCTGTGTTGGCGCTATTGACATTACACAATTATCTGTAGCG GGATATCTACTTGGGGCTGATAAACCGTTT
genomic: CAAAGTGGATCTGTGTTGGCGCTATTGACATTACACAATTATCTGTAGCGggtaaatttt ... tatggttgcaGGATATCTACTTGGGGCTGATAAACCGTTT
ccattactttgtaacaaaaatgcaaaatagattaaaattcttacttatggttgcaGGATATCTACTTGGGGCTGATAAACCGTTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCA
ttcttac putative branch site (score: 2)
ttcttactt CT-rich tract
taacaaaaatgcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttcttttcatatgattcataattcagtatttttcattataaaccattactttgtaacaaaaatgcaaaatagattaaaattcttacttatggttgcaGGATATCTACTTGGGGCTGATAAACCGTTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcaaa