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gtacattacagaagcgaacgtctttcctgactattttggttcttaatctgcaaagtggttactaatttctttttcatatacaagaagttttttatacaagaaattaacttcttgtacctaacactgaaattaaaatatgtcccagGCTCTAAGTGAGAGGGGCTATGAGCTGGTTTCTGGGGGAACTGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG
species | Glycine max |
transcript | GLYMA18G27710.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAG GCTCTAAGTGAGAGGGGCTATGAGCTGGTTTCTGGGGGAACTGAGAATCACEST: gi|193413746|gb|FK380025.1|FK380025
genomic: ATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAGgtacattaca ... tatgtcccagGCTCTAAGTGAGAGGGGCTATGAGCTGGTTTCTGGGGGAACTGAGAATCAC
EST: ATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAG GCTCTAAGTGAGGAGGGGGCTATGAGCTGGTTTCTGGGGGAACTGAGAATCEST: gi|208259390|gb|GE053876.1|GE053876
genomic: ATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAGgtacattaca ... tatgtcccagGCTCTAAGTGAG-AGGGG-CTATGAGCTGGTTTCTGGGGGAACTGAGAATC
EST: ATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAG GCTCTAAGTGAGAGGGGCTATGAGEST: gi|193328046|gb|FK296895.1|FK296895
genomic: ATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAGgtacattaca ... tatgtcccagGCTCTAAGTGAGAGGGGCTATGAG
EST: ATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAG GCTCTAAGTGAGAGGGGCTATGAGCTGGTTTCTGGGGGAACTGAGAATCACEST: gi|208210316|gb|GE003957.1|GE003957
genomic: ATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAGgtacattaca ... tatgtcccagGCTCTAAGTGAGAGGGGCTATGAGCTGGTTTCTGGGGGAACTGAGAATCAC
EST: ATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAG GCTCTAAGTGAGAGGGGCTATGAGEST: gi|120533930|gb|EH262063.1|EH262063
genomic: ATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAGgtacattaca ... tatgtcccagGCTCTAAGTGAGAGGGGCTATGAG
EST: ATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAG GCTCTAAGTGAGAGGGGCTATGAGCTGGTTTCTGGGGGAACTGAGAATCAC
genomic: ATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAGgtacattaca ... tatgtcccagGCTCTAAGTGAGAGGGGCTATGAGCTGGTTTCTGGGGGAACTGAGAATCAC
tttatacaagaaattaacttcttgtacctaacactgaaattaaaatatgtcccagGCTCTAAGTGAGAGGGGCTATGAGCTGGTTTCTGGGGGAACTGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG
acctaac putative branch site (score: 2)
actgaaattaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattacagaagcgaacgtctttcctgactattttggttcttaatctgcaaagtggttactaatttctttttcatatacaagaagttttttatacaagaaattaacttcttgtacctaacactgaaattaaaatatgtcccagGCTCTAAGTGAGAGGGGCTATGAGCTGGTTTCTGGGGGAACTGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA