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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ttagttcatctgcatctatggtttggtacaaatctctgtttcatttggtgatactgacatcttatgctttgattaatgatcagcTAATATATGAAAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG

Basic information

species Glycine max
transcript GLYMA18G08180.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08180.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 12
------------------------------------------ttagttcatctgcatctatggtttggtacaaatctctgtttcatttggtgat-actgacatcttatgctttgattaatgatcagcTAATATATGAAAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG
                                            ||     || ||   |||  |  | ||| || ||| | |  |    |  | ||||   | ||||| ||  || | ||  |||||||| ||||||||  | ||||| |||||||| || |||||||||||||| ||||| ||| | || ||||||| 
gttggacagatctctctctctctgtatccttgtctcccatgcacagacacactacacacatgcat--gcacagatatctatctactaacattttgactgtttttttatgtttcaatgactggacagCTAATCTATGAAAAACTTCCAAAAGATATCTCAGACAGGCATGTGTTACTCTTGGATCCTGTCCTAGGCACAG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21602644|gb|BQ612975.1|BQ612975
EST:     CAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGC                         TAATATATGAAAAGTTGCCTTATGATATCTCTGATAGGCATGTGTTACTGT
genomic: CAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGGttagttcatc ... aatgatcagcTAATATATGAAAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTACTGT
EST: gi|58019197|gb|CX705939.1|CX705939
EST:     CAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGC                         TAATATATGAAAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTACTGT
genomic: CAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGGttagttcatc ... aatgatcagcTAATATATGAAAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTACTGT
EST: gi|58018989|gb|CX705731.1|CX705731
EST:     CAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGC                         TAATATATGAAAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTACTGT
genomic: CAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGGttagttcatc ... aatgatcagcTAATATATGAAAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTACTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatctctgtttcatttggtgatactgacatcttatgctttgattaatgatcagcTAATATATGAAAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG
                                      tttgattaat  TA-rich tract