1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...catgaacatattatttcctaagtgcattaacttttattatttccaacatgaattccttcaactatttcccataatgtagaacatgatgtctgcatctgcaGGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGCCTGCAACACAAAA
species | Glycine max |
transcript | GLYMA17G37540.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTTCATGGCTGCTGCAAAAGTTTTTCTGGCATC AGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGCCTGCAACACAAAAEST: gi|192301029|gb|FG987984.1|FG987984
genomic: TTTCATGGCTGCTGCAAAAGTTTTTCTGGCATCagtaagcatc ... tgcatctgcaGGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGCCTGCAACACAAAA
EST: GGTGGCAAAACGGAGGATTTCATGGCCGCTGCAAAAGTTTTTCTGGCATC AGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGCCTGCAACACAAAAEST: gi|208231476|gb|GE033525.1|GE033525
genomic: GGTGGCAAAACGGAGGATTTCATGGCTGCTGCAAAAGTTTTTCTGGCATCagtaagcatc ... tgcatctgcaGGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGCCTGCAACACAAAA
EST: GGTGGCAAAACGGAGGATTTCATGGCTGCTGCAAAAGTTTTTCTGGCATC AGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGTCTGCAACACAAAAEST: gi|254317170|gb|GR826115.1|GR826115
genomic: GGTGGCAAAACGGAGGATTTCATGGCTGCTGCAAAAGTTTTTCTGGCATCagtaagcatc ... tgcatctgcaGGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGCCTGCAACACAAAA
EST: AAAACGGAGGATTTCATGGCTGCTGCAAAAGTTTTTCTGGCATC AGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGCCTGCAACACAAAAEST: gi|120494416|gb|EH222583.1|EH222583
genomic: AAAACGGAGGATTTCATGGCTGCTGCAAAAGTTTTTCTGGCATCagtaagcatc ... tgcatctgcaGGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGCCTGCAACACAAAA
EST: GGTGGCAAAACGGAGGATTTCATGGCTGCTGCAAAAGTTTTTCTGGCATC AGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGCCTGCAACACAAAA
genomic: GGTGGCAAAACGGAGGATTTCATGGCTGCTGCAAAAGTTTTTCTGGCATCagtaagcatc ... tgcatctgcaGGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGCCTGCAACACAAAA
acatgaattccttcaactatttcccataatgtagaacatgatgtctgcatctgcaGGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGCCTGCAACACAAAA
aactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgaacatattatttcctaagtgcattaacttttattatttccaacatgaattccttcaactatttcccataatgtagaacatgatgtctgcatctgcaGGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGCCTGCAACACAAAA
catgaac
- - - - - - - - - - - tgcatta
- - - - - - - - - - - - - - - - - - - - - ccaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - -tccttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtc