1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctggaagtgtgtttccaaacacgtatttagtataactttccctttgtggaatttgtgtgatagtacttaccattcattgttttctttttgtcttgtctagGTTGCAAGTTGGAGGAGTGCAACTTCTGATACTGGACCTCCTGTAATAAAGTGGGCTCCTGGAAGTCTTATGTTTGCTACAGGATCATCTGAGTTGTCAT
species | Glycine max |
transcript | GLYMA17G33900.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTTCTGGAGAAGGCAGCATCTACGCATGGAGTGTTCGAAGTGGCAAAGAA GTTGCAAGTTGGAGGAGTGCAACTTCTGATACTGGACCTCCTGTAATAAAGEST: gi|51338113|gb|CO981979.1|CO981979
genomic: GTTCTGGAGAAGGCAGCATCTACGCATGGAGTGTTCGAAGTGGCAAAGAAgtacgataag ... tcttgtctagGTTGCAAGTTGGAGGAGTGCAACTTCTGATACTGGACCTCCTGTAATAAAG
EST: GTTCTGGAGAAGGCAGCATCTACGCATGGAGTGTTCGAAGTGGCAAAGAA GTTGCAAGTTGGAGGAGTGCAACTTCTGATACTGGACCTCCTGTAATAAAGEST: gi|19348126|gb|BM892658.1|BM892658
genomic: GTTCTGGAGAAGGCAGCATCTACGCATGGAGTGTTCGAAGTGGCAAAGAAgtacgataag ... tcttgtctagGTTGCAAGTTGGAGGAGTGCAACTTCTGATACTGGACCTCCTGTAATAAAG
EST: GTTCTGGAGAAGGCAGCATCTACGCATGGAGTGTTCGAAGTGGCAAAGAA GTTGCAAGTTGGAGGAGTGCAACTTCTGATACTGGACCTCCTGTAATA
genomic: GTTCTGGAGAAGGCAGCATCTACGCATGGAGTGTTCGAAGTGGCAAAGAAgtacgataag ... tcttgtctagGTTGCAAGTTGGAGGAGTGCAACTTCTGATACTGGACCTCCTGTAATA
gtggaatttgtgtgatagtacttaccattcattgttttctttttgtcttgtctagGTTGCAAGTTGGAGGAGTGCAACTTCTGATACTGGACCTCCTGTAATAAAGTGGGCTCCTGGAAGTCTTATGTTTGCTACAGGATCATCTGAGTTGTCAT
tacttac putative branch site (score: 1)
ttcattgttttctttt putative PPT
attgttttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggaagtgtgtttccaaacacgtatttagtataactttccctttgtggaatttgtgtgatagtacttaccattcattgttttctttttgtcttgtctagGTTGCAAGTTGGAGGAGTGCAACTTCTGATACTGGACCTCCTGTAATAAAGTGGGCTCCTGGAAGTCTTATGTTTGCTACAGGATCATCTGAGTTGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG