Sequence
atgc intronic sequence ATGC exonic sequencegttatatttatattcattgcttctttgtttacctcttcatttgaatatatttattgagggagttctttattttacagGATGTTGTTGATCCAGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCCAAGCAAGATGATAAGTCCT
Basic information
species | Glycine max |
transcript | GLYMA17G03920.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G03920.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv01s0150g00390.t01 (Vitis vinifera), 3'ss of exon 12
gttatatttatatt--cattgcttctttgtttacctcttcatttgaatatatttattgagggagttctttattt--tacagGATGTTGTTGATCCAGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCCAAGCAAGATGATAAGTCCT
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gttatttttctactactcttatcttttcctttacatttctatgtgt-tactttaagcacgggggaaacttgtttaatgcagGACGTTGTTGACCCAGTCACAGACGAGATGCTTGCAAAGTTTGTGGTTGATAGTCATTTCAAGTCACAACCCAAGGGCACTAATGTAGAGGATAAGTCCT
upper sequence: GLYMA17G03920.1 (Glycine max), 3'ss of exon 12
lower sequence: EFJ17122 (Selaginella moellendorffii), 3'ss of exon 11
gttatatttatattcattgcttctttgtttacctcttcatttgaatatatttattgagggagttctttattttacagGATGTTGTTGATCCAGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCCAAGCAAGATGATAAGTCCT----
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---------------gtaacctctgcattagctatttt------acatactt-tagatccaattgtg-atcttctagGACACTGTCGATCCTGTCATAGATGAAATGCTGGCAAGATTTGTCGTTGACAGTCATTTCAAGTCTCATCCAAACATTGCGAAG---GATCA-AACTCCTGAAA
upper sequence: GLYMA17G03920.1 (Glycine max), 3'ss of exon 12
lower sequence: EFJ31227 (Selaginella moellendorffii), 3'ss of exon 9
gttatatttatattcattgcttctttgtttacctcttcatttgaatatatttattgagggagttctttattttacagGATGTTGTTGATCCAGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCCAAGCAAGATGATAAGTCCT----
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---------------gtaacctctgcattagctatttt------acatactttaggatctaattgtg-atcttctagGACACTGTCGATCCTGTCATAGATGAAATGCTGGCAAGATTTGTCGTTGACAGTCATTTCAAGTCTCATCCAAACATTGCGAAG---GATCA-AACTCCTGAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22523731|gb|BU082542.1|BU082542EST: AATTGACAGATCCAATTATTTCTCGTTTTGATATCCTCTGTGTTGTGAAG GATGTTGTTGATCCAGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGAC
genomic: AATTGACAGATCCAATTATTTCTCGTTTTGATATCCTCTGTGTTGTGAAGgttatattta ... tattttacagGATGTTGTTGATCCAGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttgtttacctcttcatttgaatatatttattgagggagttctttattttacagGATGTTGTTGATCCAGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCCAAGCAAGATGATAAGTCCT
ttctttatttt CT-rich tract
tcttcatttgaatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gttatatttatattcattgcttctttgtttacctcttcatttgaatatatttattgagggagttctttattttacagGATGTTGTTGATCCAGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCCAAGCAAGATGATAAGTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG