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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttcatttacatcttgctgctctgtatgttccttcctctgaattatttaaccttatcactgattaaatacagGTTACAACTCCACTTTTGTTTAAATTGATTCCTGCTGTCATGAATCTGGGTGTTCTCATGCACTGGTTCCCCAATGAAAGTAGCACACAAATTGAG

Basic information

species Glycine max
transcript GLYMA16G32820.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32820.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 18
---------------------------------------------------------------------------------------gtaatttcatttacatc---ttgctgctct---gtatgttccttcctct-gaattattt---------aaccttatcactgattaaa-tacagGTTACAACTCCACTTTTGTTTAAATTGATTCCTGCTGTCATGAATCTGGGTGTTCTCATGCACTGGTTCCCCAATGAAAGTAGCACACAAATTGAG
                                                                                       | || || | |         |   |   ||   ||| ||| || |  |  ||||| |||         | |  |   | ||||||   ||||||| || |||||  |  |||| ||| |||| ||||| || ||| || |||||||||||||||||||||||||    || |  ||||  || | ||||
gtaagtgtcttttacagaaaaccttggttctctctttcctaacttgctttgtcatagacatatagcacaaaagcttttgagttttatgaaaatttactagtgctggataagtaagctagagtacgtttctacaccaagaattttttttttaaataagctctgctaatgattatcctacagGTGACGACTCCTGTCCTGTTCAAACTGATCCCTGCGGTGATGCATTTGGGTGTTCTCATGCACTGGTTCCCTTCAGAGAACAGCAATCAGAATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193425846|gb|FK386955.1|FK386955
EST:     GGGAAAATGTATCTTCTTCTTCTGGGGACAACGGCTCTCAGTCTG                         GTTACAACTCCACTTTTGTTTTAAATTGATTCCTGCTGTCATGAATCTGGG
genomic: GGGAAAATGTATCTTCTTCTTCTGGGGACAACGGCTCTCAGTCTGgtaatttcat ... ttaaatacagGTTACAACTCCACTTTTG-TTTAAATTGATTCCTGCTGTCATGAATCTGGG
EST: gi|151401828|gb|EV271641.1|EV271641
EST:     GGGAAAATGTATCTTCTTCTTCTGGGGACAACGGCTCTCAGTCTG                         GTTACAACCCCACTTTTGTTTAAATTGATTCCTGCTGTCATGAATCTGGGT
genomic: GGGAAAATGTATCTTCTTCTTCTGGGGACAACGGCTCTCAGTCTGgtaatttcat ... ttaaatacagGTTACAACTCCACTTTTGTTTAAATTGATTCCTGCTGTCATGAATCTGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctctgtatgttccttcctctgaattatttaaccttatcactgattaaatacagGTTACAACTCCACTTTTGTTTAAATTGATTCCTGCTGTCATGAATCTGGGTGTTCTCATGCACTGGTTCCCCAATGAAAGTAGCACACAAATTGAG
                                       cactgat  putative branch site (score: 3)
                       aattatttaaccttat  TA-rich tract