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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggactttgtgacaagcaaggactgtagctacttaactccaggcaccttctatctcaccaatgttgattccatgtacagGAGATTTTATGCCAAGAAGGACTAGGTTATTGGTTAGTTGATGATCGCTGATATATTCAAATATGGAGTTAAAATGTATTTTCTTATGGTTCACCTGTAT

Basic information

species Glycine max
transcript GLYMA16G32480.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32480.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv02s0025g04580.t01 (Vitis vinifera), 3'ss of exon 11
--gtaaggactttgtgacaagcaa---ggactgtagctactt---aactccaggcaccttctatctcaccaatg------ttgattccatgtacagGAGATTTTATGCCAAGAAGGACTAGGTTATTGGTTAGTTGATG-ATCGCTGATATAT--TCAAATATGGAGTTA-AAATGTATTTTCTTATGGTTCACCTGTAT
    |   || || | | |  |||    |  ||||| ||      ||  | |   |   |   ||   | |||       ||| || | |||    |   |||  | |  | ||       |  ||     |||| ||| | |   | |||     |||  |    || | || |      | |     || ||||  | 
tttcacatacattctaaaagacaattcagcttgtagataagggggaaaacaaaaaaggatgactcatcctaatagaacatttgctttcttgtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTATGGGGCCAAGGACTTTGTGACAAGTAAGGACTGTAGCCTTTTACCTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31458453|gb|CD400481.1|CD400481
EST:     TCCTGAAAAGTTCGTTGAAACATTGAAGATCATGGAACACCGTTATGGGG                         GAGATTTTATGCCAAGAAGGACTAGGTTATTGGTTAGTTGATGATCGCTGA
genomic: TCCTGAAAAGTTCGTTGAAACATTGAAGATCATGGAACACCGTTATGGGGgtaaggactt ... ccatgtacagGAGATTTTATGCCAAGAAGGACTAGGTTATTGGTTAGTTGATGATCGCTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagctacttaactccaggcaccttctatctcaccaatgttgattccatgtacagGAGATTTTATGCCAAGAAGGACTAGGTTATTGGTTAGTTGATGATCGCTGATATATTCAAATATGGAGTTAAAATGTATTTTCTTATGGTTCACCTGTAT
     tacttaa  TA-rich tract