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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taatctaactcagaattcttagtgattggaagtataaagttgagctgtgttggacttttcatagttattttgtgttgctaatttacatttcattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGA

Basic information

species Glycine max
transcript GLYMA16G31860.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G31860.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv16s0100g01300.t01 (Vitis vinifera), 3'ss of exon 11
taatctaactcagaattctt--agtgattggaagtataaagttgagctgtgttggacttttcatagttattttgtgttgctaatttacatttcattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGA
|||   | || |    || |  |||       || |    ||| || | |  | || |||    | |  |  |   ||  | |||||  |||   |    ||||| |||||||||||| || || ||||||||| | || || ||||||||||||||||||| |||||| ||  |  | ||| |  |  |||| || || ||
taacacatctaaagtgtcatcaagttccatacagaagtttgttcagttattcttgagtttgtcaaatattcattatttatttatttattttttggt--tcagATGAGTATATCCTTCCTAAGATCGCTGAAAGAGACTTGCGGCGATTTGCCAATTTGCGTTCAACTTCTTCAAACTTGGGAATTCATTTTCCGTTGCACGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208077147|gb|GD879156.1|GD879156
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|208124566|gb|GD925104.1|GD925104
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193365547|gb|FK332334.1|FK332334
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTTACGACGATTTGCC
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAA-TTTACGACGATTTGCC
EST: gi|208178344|gb|GD978297.1|GD978297
EST:     CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTAACGACGA
genomic: CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACA-Ggttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTA-CGACGA
EST: gi|193665986|gb|FK610491.1|FK610491
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|208302509|gb|GE097068.1|GE097068
EST:     CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAAG                         ATGGGTATATCCTTCCAAAT
genomic: CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACA-Ggttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAAT
EST: gi|193455889|gb|FK417010.1|FK417010
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193635781|gb|FK580360.1|FK580360
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTG
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTG
EST: gi|208307008|gb|GE101548.1|GE101548
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193363661|gb|FK330881.1|FK330881
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATT-GCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|208081536|gb|GD879922.1|GD879922
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193305525|gb|FK269986.1|FK269986
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|208027392|gb|GD825818.1|GD825818
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193328307|gb|FK294328.1|FK294328
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTNAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTG
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTG
EST: gi|208189809|gb|GD987769.1|GD987769
EST:     CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAAG                         ATGGGTATATCCTTCC
genomic: CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACA-Ggttcttcgtc ... cattaaatagATGGGTATATCCTTCC
EST: gi|193703030|gb|FK639252.1|FK639252
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193402040|gb|FK369401.1|FK369401
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193391981|gb|FK355662.1|FK355662
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAAGAAATTTACGACGATTTGCC
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAA-GAAATTTACGACGATTTGCC
EST: gi|207834137|gb|GD808516.1|GD808516
EST:     CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAAG                         ANGG-TGTATCCTTCC
genomic: CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACA-Ggttcttcgtc ... cattaaatagATGGGTATATCCTTCC
EST: gi|207726251|gb|GD704619.1|GD704619
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193675317|gb|FK619107.1|FK619107
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAAAATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193351967|gb|FK318796.1|FK318796
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193431058|gb|FK398218.1|FK398218
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193676751|gb|FK617873.1|FK617873
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGTCC
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTG-CC
EST: gi|207715576|gb|GD696690.1|GD696690
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAG
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAG
EST: gi|193372953|gb|FK335063.1|FK335063
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTA
EST: gi|193616707|gb|FK567849.1|FK567849
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACG
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACG
EST: gi|193627977|gb|FK573245.1|FK573245
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTG
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTG
EST: gi|207765664|gb|GD735909.1|GD735909
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGCATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193639323|gb|FK586110.1|FK586110
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTNAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193324260|gb|FK292624.1|FK292624
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATT-GCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193508573|gb|FK465436.1|FK465436
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTACCAAAATAATAGCTGAAAGAAATTTACGACGATTTG
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTT-CCAAA-TA-TAGCTGAAAGAAATTTACGACGATTTG
EST: gi|193432198|gb|FK395662.1|FK395662
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTAGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|208138033|gb|GD938501.1|GD938501
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193383926|gb|FK353123.1|FK353123
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|208249109|gb|GE046734.1|GE046734
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTACCAAAATAATAGCTGAAAG
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTT-CCAAA-TA-TAGCTGAAAG
EST: gi|193348700|gb|FK317748.1|FK317748
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193325804|gb|FK290243.1|FK290243
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAGGAAATTTACGACGATTTGTCC
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTG-CC
EST: gi|193556390|gb|FK515715.1|FK515715
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|207691336|gb|GD673274.1|GD673274
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAA
EST: gi|193561210|gb|FK520247.1|FK520247
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193641596|gb|FK592422.1|FK592422
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTNAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: gi|193358758|gb|FK328436.1|FK328436
EST:     ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG                         ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgttggacttttcatagttattttgtgttgctaatttacatttcattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGA
                              tgctaat  putative branch site (score: 2)
                                          tttcatt  putative PPT
                                 taatttacatttcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taatctaactcagaattcttagtgattggaagtataaagttgagctgtgttggacttttcatagttattttgtgttgctaatttacatttcattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - -cttagtg
- - - - - - - - - - - - - - - - - - - - - - - gtgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct