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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtcaattgatgactttcgagtgattgtttgactgatcagatgatacacagctacattgattttttttttttgtcatttacagACCATAGCATAAACAAGGAGAACAACAATTCAAGGGCAATCAGAGATGATTCATTGGCTATTAATTCACCACCTATCAGTTCTCAGTTGCAGGATCTTTC

Basic information

species Glycine max
transcript GLYMA16G30120.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011771|gb|BG726693.1|BG726693
EST:     TCCTTATGCTAGTAATTACTCTGAAGTATTGGCAAAAATAGTTCAGGAAG                         ACCATAGCATAAACAAGGAGAACAACAATTCAAGGGCAATCAGAGATGATT
genomic: TCCTTATGCTAGTAATTACTCTGAAGTATTGGCAAAAATAGTTCAGGAAGgttcgtcaat ... tcatttacagACCATAGCATAAACAAGGAGAACAACAATTCAAGGGCAATCAGAGATGATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgactgatcagatgatacacagctacattgattttttttttttgtcatttacagACCATAGCATAAACAAGGAGAACAACAATTCAAGGGCAATCAGAGATGATTCATTGGCTATTAATTCACCACCTATCAGTTCTCAGTTGCAGGATCTTTC
                                ttttttttttttgtca  CT-rich tract
                        tacattgatttttttt  TA-rich tract