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gtaatttacatttcttttaactgacactgacaatttttctcttatttttctttccacttgaaattggaatcacccatacatgctggtatagtttcaaaagcatcatttgtgaatcaaattgataaatcttctctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTTGGTAGCTATGATGATGTTGAGGAAATCAAAGCTCTTTATGCTGCTGCTG
species | Glycine max |
transcript | GLYMA16G28310.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGG GCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTTEST: gi|26269057|gb|CA820120.1|CA820120
genomic: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGGgtaatttaca ... ctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGG GCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTTEST: gi|15204366|gb|BI427134.1|BI427134
genomic: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGGgtaatttaca ... ctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGG GCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTTEST: gi|31457542|gb|CD399570.1|CD399570
genomic: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGGgtaatttaca ... ctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGG GCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTTEST: gi|31473114|gb|CD415142.1|CD415142
genomic: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGGgtaatttaca ... ctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGG GCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTTEST: gi|22928833|gb|BU545972.1|BU545972
genomic: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGGgtaatttaca ... ctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGG GCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTTEST: gi|31469604|gb|CD411632.1|CD411632
genomic: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGGgtaatttaca ... ctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGG GCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTTEST: gi|192304055|gb|FG993885.1|FG993885
genomic: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGGgtaatttaca ... ctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACAG GCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTTEST: gi|151398810|gb|EV268681.1|EV268681
genomic: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGGgtaatttaca ... ctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGG GCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTTEST: gi|31456318|gb|CD398346.1|CD398346
genomic: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGGgtaatttaca ... ctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCCAGGAACGG GCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTTEST: gi|7692550|gb|AW760653.1|AW760653
genomic: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGGgtaatttaca ... ctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGG GCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTTEST: gi|21675556|gb|BQ627907.1|BQ627907
genomic: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGGgtaatttaca ... ctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGG GCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTT
genomic: CATTCTTGATGGAACAGGCAGGAGGACAGTCTTTCACGGGCAAGGAACGGgtaatttaca ... ctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTT
atagtttcaaaagcatcatttgtgaatcaaattgataaatcttctctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTTGGTAGCTATGATGATGTTGAGGAAATCAAAGCTCTTTATGCTGCTGCTG
aattgat putative branch site (score: 4)
tcttctctgttatc putative PPT
aatcaaattgataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttacatttcttttaactgacactgacaatttttctcttatttttctttccacttgaaattggaatcacccatacatgctggtatagtttcaaaagcatcatttgtgaatcaaattgataaatcttctctgttatcagGCACTTGATTTAGTTCCAACGAAGTTGCACGAGCGATCTCCCATATTCCTTGGTAGCTATGATGATGTTGAGGAAATCAAAGCTCTTTATGCTGCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT