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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattcagatatttagtggataagaatacctatttatgtactgggtagggaggagtttgcagttgattggtctaatgatgatattatttgttgttgtttaacatatttgttttgcagAAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG

Basic information

species Glycine max
transcript GLYMA16G27210.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207691204|gb|GD673212.1|GD673212
EST:     ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCT                         AAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
genomic: ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCTgtaagtattc ... tgttttgcagAAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
EST: gi|207691197|gb|GD673205.1|GD673205
EST:     TTGATGGAAGCATCGTACTTTGCT                         AAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
genomic: TTGATGGAAGCATCGTACTTTGCTgtaagtattc ... tgttttgcagAAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
EST: gi|21256789|gb|BQ453677.1|BQ453677
EST:     ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGCACTTTGCT                         AAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
genomic: ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCTgtaagtattc ... tgttttgcagAAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
EST: gi|11412011|gb|BF424022.1|BF424022
EST:     ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCT                         AAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
genomic: ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCTgtaagtattc ... tgttttgcagAAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
EST: gi|15202278|gb|BI425317.1|BI425317
EST:     ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCT                         AAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
genomic: ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCTgtaagtattc ... tgttttgcagAAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
EST: gi|254323261|gb|GR840066.1|GR840066
EST:     ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCT                         AAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
genomic: ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCTgtaagtattc ... tgttttgcagAAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
EST: gi|8670051|gb|BE191158.1|BE191158
EST:     ACCGAATGAATCTAACTCCNGTGGCCTTGATGGAAGCATCGTACTTTGCT                         AAAACTGTATTTGGT
genomic: ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCTgtaagtattc ... tgttttgcagAAAACTGTATTTGGT
EST: gi|14012095|gb|BG727026.1|BG727026
EST:     ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCT                         AAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
genomic: ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCTgtaagtattc ... tgttttgcagAAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
EST: gi|7589454|gb|AW705228.1|AW705228
EST:     ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCT                         AAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
genomic: ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCTgtaagtattc ... tgttttgcagAAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
EST: gi|57575684|gb|CX548659.1|CX548659
EST:     ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCT                         AAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC
genomic: ACCGAATGAATCTAACTCCGGTGGCCTTGATGGAAGCATCGTACTTTGCTgtaagtattc ... tgttttgcagAAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgattggtctaatgatgatattatttgttgttgtttaacatatttgttttgcagAAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG
                                 gtttaac  putative branch site (score: 3)
                                           tttgtttt  putative PPT
                  atattatttgttgttg  TA-rich tract