1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...taagagttagttgattattttattgttgtttaatttttataaatttatgcactatgtgtatttatgcgttgatcaaagttggtttctgctcttgcatcagGTTTCAAGTGCAGTGGATCACGTGCAGCAAGGCAACAATGCCCTCCAGAAGGCAAAGAAACTACAAAGGAACTCTAGAAAATGGATGTGCATTGCAATCA
species | Glycine max |
transcript | GLYMA16G27050.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CGGTGTTAGTCGACGCTCAAGGAGACATGCTTGACAACATAGAAACACAG GTTTCAAGTGCAGTGGATCACGTGCAGCAAGGCAACAATGCCCTCCAGAAGEST: gi|254315172|gb|GR830165.1|GR830165
genomic: CGGTGTTAGTCGACGCTCAAGGAGACATGCTTGACAACATAGAAACACAGgtatttttta ... cttgcatcagGTTTCAAGTGCAGTGGATCACGTGCAGCAAGGCAACAATGCCCTCCAGAAG
EST: CGGTGTTAGTCGACGCTCAAGGAGACATGCTTGACAACATAGAAACACAG GTTTCAAGTGCAGTGGATCACGTGCAGCAAGGCAACAATGCCCTCCAGAAGEST: gi|6725837|gb|AW310236.1|AW310236
genomic: CGGTGTTAGTCGACGCTCAAGGAGACATGCTTGACAACATAGAAACACAGgtatttttta ... cttgcatcagGTTTCAAGTGCAGTGGATCACGTGCAGCAAGGCAACAATGCCCTCCAGAAG
EST: GAGACATGCTTGACAACATAGAAACACAG GTTTCAAGTGCAGTGGATCACGTGCAGCAAGGCAACAATGCCCTCCAGAAG
genomic: GAGACATGCTTGACAACATAGAAACACAGgtatttttta ... cttgcatcagGTTTCAAGTGCAGTGGATCACGTGCAGCAAGGCAACAATGCCCTCCAGAAG
tatgcactatgtgtatttatgcgttgatcaaagttggtttctgctcttgcatcagGTTTCAAGTGCAGTGGATCACGTGCAGCAAGGCAACAATGCCCTCCAGAAGGCAAAGAAACTACAAAGGAACTCTAGAAAATGGATGTGCATTGCAATCA
cgttgat putative branch site (score: 5)
tttctgctctt putative PPT
tgtatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagagttagttgattattttattgttgtttaatttttataaatttatgcactatgtgtatttatgcgttgatcaaagttggtttctgctcttgcatcagGTTTCAAGTGCAGTGGATCACGTGCAGCAAGGCAACAATGCCCTCCAGAAGGCAAAGAAACTACAAAGGAACTCTAGAAAATGGATGTGCATTGCAATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - - -tttatgc
- - - - - - - - - - - - - - - - - - - - - - -tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - tatgtgt